Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p12
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7549| Best HMM Match : TraB (HMM E-Value=6.79994e-41)              105   5e-23

>SB_7549| Best HMM Match : TraB (HMM E-Value=6.79994e-41)
          Length = 478

 Score =  105 bits (251), Expect = 5e-23
 Identities = 49/118 (41%), Positives = 77/118 (65%)
 Frame = +2

Query: 323 RCFRELCRQRVSXXXXXXXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAK 502
           R   ELC+ R+             AKN D +KLK A+K   +V G++  +LL   A I +
Sbjct: 187 RVLVELCKSRIDILKYDEEFLLREAKNIDMQKLKLAIKQSGVVGGIMQVLLLSMSAHITQ 246

Query: 503 ELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTS 676
           +LG+APGGEFR AY E +K+ GC+++LGDRPIQ+T++RA  +L+V++  ++ +H+ T+
Sbjct: 247 QLGMAPGGEFRAAYREARKL-GCQVHLGDRPIQVTLSRAMAALTVWQKVKLAWHLLTT 303



 Score = 37.1 bits (82), Expect = 0.014
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +3

Query: 234 LPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSENFVA 347
           LP++ T L+  +   V ++GT HFSK+S EDV++   A
Sbjct: 145 LPETVTKLETPEGCVVYVIGTAHFSKESQEDVAKTIQA 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,939,984
Number of Sequences: 59808
Number of extensions: 436020
Number of successful extensions: 889
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)