Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p12
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70854-4|AAP40536.1|  452|Caenorhabditis elegans Hypothetical pr...    94   1e-19
U70854-3|AAP40537.1|  450|Caenorhabditis elegans Hypothetical pr...    94   1e-19
AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine re...    33   0.20 
U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical p...    28   5.8  
DQ150101-1|AAZ77787.1|  386|Caenorhabditis elegans synthetic mul...    28   5.8  
AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA s...    28   5.8  
AF025452-10|AAB70947.2|  386|Caenorhabditis elegans Hypothetical...    28   5.8  
AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRN...    28   5.8  

>U70854-4|AAP40536.1|  452|Caenorhabditis elegans Hypothetical
           protein F38A5.2a protein.
          Length = 452

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 43/115 (37%), Positives = 68/115 (59%)
 Frame = +2

Query: 335 ELCRQRVSXXXXXXXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 514
           ELC  R+S            AK+ +S+K+ Q +K    + G+LH +LL   A + +EL +
Sbjct: 189 ELCPSRISIISMDEARLLSEAKDLNSQKIIQTMKQNGAIQGILHVLLLSMSAHVTRELSM 248

Query: 515 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSN 679
           APGGEFR A+        C++ LGDRPIQ+T+ RA  SLS+++  +  +H++ S+
Sbjct: 249 APGGEFRAAHRAAVATENCRVVLGDRPIQVTLQRALASLSIWQKIRFFFHVAFSH 303



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +3

Query: 273 ATVVLLGTVHFSKQSIEDVSENFVA 347
           +T+ L+GT HFSK+S EDVS    A
Sbjct: 156 STIYLIGTAHFSKESQEDVSNTIRA 180


>U70854-3|AAP40537.1|  450|Caenorhabditis elegans Hypothetical
           protein F38A5.2b protein.
          Length = 450

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 43/115 (37%), Positives = 68/115 (59%)
 Frame = +2

Query: 335 ELCRQRVSXXXXXXXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 514
           ELC  R+S            AK+ +S+K+ Q +K    + G+LH +LL   A + +EL +
Sbjct: 187 ELCPSRISIISMDEARLLSEAKDLNSQKIIQTMKQNGAIQGILHVLLLSMSAHVTRELSM 246

Query: 515 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSN 679
           APGGEFR A+        C++ LGDRPIQ+T+ RA  SLS+++  +  +H++ S+
Sbjct: 247 APGGEFRAAHRAAVATENCRVVLGDRPIQVTLQRALASLSIWQKIRFFFHVAFSH 301



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +3

Query: 273 ATVVLLGTVHFSKQSIEDVSENFVA 347
           +T+ L+GT HFSK+S EDVS    A
Sbjct: 154 STIYLIGTAHFSKESQEDVSNTIRA 178


>AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein144 protein.
          Length = 357

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 26/95 (27%), Positives = 49/95 (51%)
 Frame = +1

Query: 148 ALSQQNQILYKHIIVKRFYYERKVMYPSIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKM 327
           +L Q   +L++ I  + FYYE  +   SI+ N+ HF  +I+KP     ++ +S+N ++  
Sbjct: 21  SLCQFESLLFE-ISNRVFYYEHYLSVASIFINIFHFLILIHKP-----LRSSSIN-IIMA 73

Query: 328 FQRTLSPKSIIIGTRRKEVFGRCKKF*FQKAKTSR 432
           F       S+    + K+V+GR  ++ F     S+
Sbjct: 74  FIAIFDICSMFY--KMKQVYGRSIEYIFDPCLQSK 106


>U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical
           protein C15B12.2 protein.
          Length = 269

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -2

Query: 242 FW*MLGYITFLS**NLLTIICLYSIWFCCDNAFNILK*QLSSYYTYWAFHILFHY 78
           FW +L +IT+L    LL I CLY  + C  N+F        S+  Y  F + FHY
Sbjct: 62  FWYILTFITYLVWTLLLWIPCLYH-YTCRHNSFYHRHKLCRSFIRY--FSVTFHY 113


>Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical
           protein C25A1.7 protein.
          Length = 970

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 229 SIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLSPKSIIIGT 369
           +I  +L+ F   IN P S F+V     + LL+ FQ++   K  ++GT
Sbjct: 298 AIQYSLIQFDNEINNPTSTFYV---IASKLLEEFQKSSDRKCKVVGT 341


>Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical
           protein W02B12.6a protein.
          Length = 793

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 214 KVMYPSIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLS-PKSIIIGTRR 375
           K +YP I+    H  K+ N   + FW    +V+   KMF    +  KS II  R+
Sbjct: 363 KEVYPEIHDTSTHIRKIFNDEEAQFW---KTVDKAKKMFDSVAAESKSPIISGRK 414


>DQ150101-1|AAZ77787.1|  386|Caenorhabditis elegans synthetic
           multivulva protein LIN-8 protein.
          Length = 386

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = +2

Query: 488 ADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHI 667
           AD+ K+L V  G E RRA   M+K+   +L     P+  T+         YE  +   + 
Sbjct: 165 ADLLKDLDVVLGLEARRASKNMEKVDSGELMEPMEPMDSTMDEMCVEEEPYE--ETGSNW 222

Query: 668 STSNPKPLDGKS 703
           S   P+P   KS
Sbjct: 223 SDPAPEPSQSKS 234


>AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA
           synthetase protein.
          Length = 793

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 214 KVMYPSIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLS-PKSIIIGTRR 375
           K +YP I+    H  K+ N   + FW    +V+   KMF    +  KS II  R+
Sbjct: 363 KEVYPEIHDTSTHIRKIFNDEEAQFW---KTVDKAKKMFDSVAAESKSPIISGRK 414


>AF025452-10|AAB70947.2|  386|Caenorhabditis elegans Hypothetical
           protein B0454.1 protein.
          Length = 386

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = +2

Query: 488 ADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHI 667
           AD+ K+L V  G E RRA   M+K+   +L     P+  T+         YE  +   + 
Sbjct: 165 ADLLKDLDVVLGLEARRASKNMEKVDSGELMEPMEPMDSTMDEMCVEEEPYE--ETGSNW 222

Query: 668 STSNPKPLDGKS 703
           S   P+P   KS
Sbjct: 223 SDPAPEPSQSKS 234


>AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 972

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 229 SIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLSPKSIIIGT 369
           +I  +L+ F   IN P S F+V     + LL+ FQ++   K  ++GT
Sbjct: 298 AIQYSLIQFDNEINNPTSTFYV---IASKLLEEFQKSSDRKCKVVGT 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,772,675
Number of Sequences: 27780
Number of extensions: 356641
Number of successful extensions: 926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)