Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p12
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05270.1 68414.m00533 TraB family protein contains Pfam domai...    55   4e-08
At5g52030.2 68418.m06456 TraB protein-related                          40   0.001
At5g52030.1 68418.m06457 TraB protein-related                          40   0.001
At2g32340.1 68415.m03953 TraB family protein contains Pfam domai...    36   0.020
At2g41080.1 68415.m05074 pentatricopeptide (PPR) repeat-containi...    31   1.0  
At2g19130.1 68415.m02233 S-locus lectin protein kinase family pr...    29   4.0  
At5g51300.2 68418.m06360 splicing factor-related contains simila...    28   5.3  
At5g51300.1 68418.m06359 splicing factor-related contains simila...    28   5.3  
At3g52400.1 68416.m05763 syntaxin, putative (SYP122) similar to ...    28   5.3  
At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal hydrolase-r...    28   5.3  
At5g14080.1 68418.m01647 pentatricopeptide (PPR) repeat-containi...    28   7.1  
At3g53540.1 68416.m05912 expressed protein                             28   7.1  
At3g03450.1 68416.m00343 gibberellin response modulator, putativ...    27   9.3  

>At1g05270.1 68414.m00533 TraB family protein contains Pfam domain
           PF01963: TraB family
          Length = 371

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 41/113 (36%), Positives = 54/113 (47%)
 Frame = +2

Query: 329 FRELCRQRVSXXXXXXXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKEL 508
           F ELC  R+S            +   +S K KQ         G+L+   L   A IA  L
Sbjct: 140 FVELCSSRLSVLKPQTLKIPTMSDMIESWKQKQNT------FGILYGWFL---AKIASHL 190

Query: 509 GVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHI 667
            V PG EFR AY E  K  G K+ LGDRP+QIT+ R +  + ++   + LY I
Sbjct: 191 EVFPGAEFRVAYEEAIKYGG-KVILGDRPVQITLKRTWAKMPLWHKVKFLYSI 242


>At5g52030.2 68418.m06456 TraB protein-related
          Length = 402

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 452 TGMLHAMLLKTYADIAKELGVAP-GGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQS 628
           T +   +LL  ++     +   P G EFR A    +++ G +L LGDRPI+IT+ RA+ S
Sbjct: 184 TALALRLLLAVFSSKLSSVADRPFGDEFRAARKASEEV-GAQLVLGDRPIEITLQRAWNS 242

Query: 629 L 631
           L
Sbjct: 243 L 243


>At5g52030.1 68418.m06457 TraB protein-related
          Length = 258

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 452 TGMLHAMLLKTYADIAKELGVAP-GGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQS 628
           T +   +LL  ++     +   P G EFR A    +++ G +L LGDRPI+IT+ RA+ S
Sbjct: 40  TALALRLLLAVFSSKLSSVADRPFGDEFRAARKASEEV-GAQLVLGDRPIEITLQRAWNS 98

Query: 629 L 631
           L
Sbjct: 99  L 99


>At2g32340.1 68415.m03953 TraB family protein contains Pfam domain
           PF01963: TraB family
          Length = 272

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +2

Query: 497 AKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQI 604
           AK+L V PG EFR  + E  K  G +++LGDR +Q+
Sbjct: 128 AKKLEVFPGAEFRVGFEEANKYGG-RVFLGDRSVQL 162


>At2g41080.1 68415.m05074 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 565

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
 Frame = +3

Query: 39  LFYRYVTKFQFL*IVK*NMKCPICVIARQLLFKNIESIVTAKPNTVQTYYSQKVL----L 206
           LF   V K+ F   +K +  C + ++ R       E+I+ + P        + +L    +
Sbjct: 316 LFDMMVEKYGFKPGLK-HYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNI 374

Query: 207 RKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSE 335
            K ++++Q + K    +  +  A  VLL  VH S +   DVSE
Sbjct: 375 HKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSE 417


>At2g19130.1 68415.m02233 S-locus lectin protein kinase family
           protein contains Pfam domains PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 828

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 316 DCLLKCTVPKRTTVACLSFCKSVADFG 236
           DC++ C +     +    FC  VADFG
Sbjct: 613 DCIIHCDIKPENILLDSQFCPKVADFG 639


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 543 YALRNSPPGATPS-SLAISAYVLSSMAWSIPVTRFWP 436
           Y   N PPGA PS   A   Y  + + W  PV  + P
Sbjct: 578 YPPSNQPPGAYPSQQYATGGYSTAPVPWGPPVPSYSP 614


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 543 YALRNSPPGATPS-SLAISAYVLSSMAWSIPVTRFWP 436
           Y   N PPGA PS   A   Y  + + W  PV  + P
Sbjct: 578 YPPSNQPPGAYPSQQYATGGYSTAPVPWGPPVPSYSP 614


>At3g52400.1 68416.m05763 syntaxin, putative (SYP122) similar to
           SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related
           protein At-Syr1) {Arabidopsis thaliana}
          Length = 341

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +3

Query: 129 LFKNIESIVTAKPNTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFS 308
           L K +++ VTA   T +        L + ++V++ LP+S     +D+Q T V+ G     
Sbjct: 86  LKKKMDADVTAALKTARRLKGNLEALDRANEVNRSLPESGPGSSSDRQRTSVVNGLRKKL 145

Query: 309 KQSIEDVS 332
           K  +E  S
Sbjct: 146 KDEMEKFS 153


>At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1094

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +1

Query: 133 LRILKALSQQNQILYKHII--VKRFYYERKVMYPSIYQNLLHF-CKMINKPRSFFWVQCT 303
           +R+L  L  + +IL   I   + RF  +  +    + +N +   C+++  P+S  +++C 
Sbjct: 302 IRLLLVLLLERKILSCSIRDWMMRFPVQHLIAQFEVSENTITTECRLVETPQSICFLECD 361

Query: 304 SVNSLLKMFQR 336
            +N +L + +R
Sbjct: 362 ELNQILDLLKR 372


>At5g14080.1 68418.m01647 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 634

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 130 YLRILKALSQQNQILYKHIIVKRFYYERKVMYPSIYQNLLHFCKMINKPRSFFWV 294
           Y  I K+LS   Q      + K+    + ++  S+Y++L+    +  K +S FWV
Sbjct: 85  YHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSVYRSLIDTLVLGRKAQSAFWV 139


>At3g53540.1 68416.m05912 expressed protein
          Length = 924

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 208 ERKVMYPSIYQNLLHFCKMINKPRSFFWVQCTSV 309
           ERK+++  I + +LH  K ++ P    WV+ T V
Sbjct: 825 ERKLLFDQISREVLHMLKQLSDPHP--WVKSTKV 856


>At3g03450.1 68416.m00343 gibberellin response modulator, putative /
           gibberellin-responsive modulator, putative similar to
           GAI (GI:2569938), RGA1 (GB:AAC67333) and  RGA2
           (GI:2339980) [Arabidopsis thaliana]; possible
           involvement in nitrogen metabolism
          Length = 547

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/52 (25%), Positives = 29/52 (55%)
 Frame = +3

Query: 195 KVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSENFVAK 350
           KV   + ++V+Q L +   +L ND   + VL  +VH++   + +  E+ +++
Sbjct: 53  KVRSSEMAEVAQKLEQLEMVLSNDDVGSTVLNDSVHYNPSDLSNWVESMLSE 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,481,789
Number of Sequences: 28952
Number of extensions: 311800
Number of successful extensions: 725
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)