Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p08
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_34646| Best HMM Match : DUF1233 (HMM E-Value=3)                     29   4.0  
SB_9880| Best HMM Match : FlaC_arch (HMM E-Value=0.77)                 29   4.0  
SB_43160| Best HMM Match : Occludin_ELL (HMM E-Value=8.4)              29   4.0  
SB_39078| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_11828| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_6394| Best HMM Match : FlaC_arch (HMM E-Value=0.77)                 29   4.0  
SB_5674| Best HMM Match : FlaC_arch (HMM E-Value=0.97)                 28   7.0  
SB_24266| Best HMM Match : Transposase_35 (HMM E-Value=1.2)            28   9.2  

>SB_58659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 5   DSKTSNSEKCKNQISNSSNRMT*TITEEYKTHITQWGRKKEEYFRRRRSRCSEDP 169
           DS+ S  E+ +NQ+S   +R+   + +E      + G++K+ + + R+  C  +P
Sbjct: 34  DSRDSRIEELENQLSELKHRLA-DVVKERDGMRKELGKEKKPFLQPRKPFCDLEP 87


>SB_34646| Best HMM Match : DUF1233 (HMM E-Value=3)
          Length = 209

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 5   DSKTSNSEKCKNQISNSSNRMT*TITEEYKTHITQWGRKKEEYFRRRRSRCSEDP 169
           DS+ S  E+ +NQ+S   +R+   + +E      + G++K+ + + R+  C  +P
Sbjct: 34  DSRDSRIEELENQLSELKHRLA-DVVKERDGMRKELGKEKKPFLQPRKHFCDLEP 87


>SB_9880| Best HMM Match : FlaC_arch (HMM E-Value=0.77)
          Length = 272

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 5   DSKTSNSEKCKNQISNSSNRMT*TITEEYKTHITQWGRKKEEYFRRRRSRCSEDP 169
           DS+ S  E+ +NQ+S   +R+   + +E      + G++K+ + + R+  C  +P
Sbjct: 34  DSRDSRIEELENQLSELKHRLA-DVVKERDGMRKELGKEKKPFLQPRKPFCDLEP 87


>SB_43160| Best HMM Match : Occludin_ELL (HMM E-Value=8.4)
          Length = 116

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 5   DSKTSNSEKCKNQISNSSNRMT*TITEEYKTHITQWGRKKEEYFRRRRSRCSEDP 169
           DS+ S  E+ +NQ+S   +R+   + +E      + G++K+ + + R+  C  +P
Sbjct: 34  DSRDSRIEELENQLSELKHRLA-DVVKERDGMRKELGKEKKPFLQPRKPFCDLEP 87


>SB_39078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 5   DSKTSNSEKCKNQISNSSNRMT*TITEEYKTHITQWGRKKEEYFRRRRSRCSEDP 169
           DS+ S  E+ +NQ+S   +R+   + +E      + G++K+ + + R+  C  +P
Sbjct: 12  DSRDSRIEELENQLSELKHRLA-DVVKERDGMRKELGKEKKPFLQPRKPFCDLEP 65


>SB_11828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 5   DSKTSNSEKCKNQISNSSNRMT*TITEEYKTHITQWGRKKEEYFRRRRSRCSEDP 169
           DS+ S  E+ +NQ+S   +R+   + +E      + G++K+ + + R+  C  +P
Sbjct: 34  DSRDSRIEELENQLSELKHRLA-DVVKERDGMRKELGKEKKPFLQPRKPFCDLEP 87


>SB_6394| Best HMM Match : FlaC_arch (HMM E-Value=0.77)
          Length = 149

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 5   DSKTSNSEKCKNQISNSSNRMT*TITEEYKTHITQWGRKKEEYFRRRRSRCSEDP 169
           DS+ S  E+ +NQ+S   +R+   + +E      + G++K+ + + R+  C  +P
Sbjct: 34  DSRDSRIEELENQLSELKHRLA-DVVKERDGMRKELGKEKKPFLQPRKPFCDLEP 87


>SB_5674| Best HMM Match : FlaC_arch (HMM E-Value=0.97)
          Length = 273

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 5   DSKTSNSEKCKNQISNSSNRMT*TITEEYKTHITQWGRKKEEYFRRRRSRCSEDP 169
           DS+ S  E  +NQ+S   +R++  + +E      + G++K+ + + R+  C  +P
Sbjct: 12  DSRDSRIEGLENQLSELKHRLS-DVVKERDGMRKELGKEKKPFLQPRKPFCDLEP 65


>SB_24266| Best HMM Match : Transposase_35 (HMM E-Value=1.2)
          Length = 151

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 181 RKMVLKHRRMKAFFNNHNPTDYITKGVRKMIGRIYSVSDRVRD-KIAESTMALDNPFSIR 357
           RK+  K R ++ F  +HN  DY+T  V+ +  RI     R+ + K+A  T   + P+  +
Sbjct: 2   RKIAYKLRTLRKFKLSHNLEDYLT-DVKNIDHRIALTKFRLSNHKLAIETGRYEKPYK-K 59

Query: 358 FYEDRCTV 381
             E +C V
Sbjct: 60  PNERKCLV 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,294,614
Number of Sequences: 59808
Number of extensions: 384977
Number of successful extensions: 890
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)