Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10p07
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 33 0.17
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635... 32 0.23
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 30 1.2
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 2.1
12_01_0086 + 690573-690998 27 8.6
06_01_0944 + 7264833-7265120,7265511-7265600,7265702-7265798,726... 27 8.6
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 32.7 bits (71), Expect = 0.17
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Frame = +1
Query: 136 HELYDLMRNYDLIDIT-LMTEVEEKRDNESCLIDETIYEDDNVHWPSIIELNKTEYNRIQ 312
HEL DL + DIT L +E+ R N ++ I + + P +++ +Y R+
Sbjct: 1545 HELVDLYHVEEEEDITTLKMMIEQHRLNTGSVVARDILSNFDTLLPKFVKVFPRDYKRVL 1604
Query: 313 AFLR------DTAKKPEAGNKVTKDSEEPQPE 390
++ AK+P+ N V+ +++ QPE
Sbjct: 1605 DNMKAEKAAAKLAKEPKISNGVSVTTKKVQPE 1636
>01_05_0451 -
22361617-22361811,22362728-22362842,22363443-22363513,
22363600-22363754,22363843-22363933,22364049-22364104,
22364910-22365027,22365087-22365200,22365289-22365504
Length = 376
Score = 32.3 bits (70), Expect = 0.23
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 202 EKRDNESCLIDETIYEDDNVHWPSIIELNKTEYNRIQAFLRDTAKKP 342
E+ D + L+D+ +DDN W S +E E +++ + R++ KP
Sbjct: 237 EEDDMTASLMDQFEVDDDNRCWASFLERISREQDQVLRYCRESTAKP 283
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 29.9 bits (64), Expect = 1.2
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = +1
Query: 163 YDLIDITLMTEVEEKRDNESCLIDETIYEDDNVHWPSIIELNKTEYNRIQAFLRDTAKKP 342
+++ DIT EV + C D D PS+I + E + AFL D
Sbjct: 266 WNISDIT--EEVHHTGSSAKCQEDMDGKNSDGPSVPSVICHEEREGELVDAFLEDLDAIH 323
Query: 343 EAGNKVTKDSEEPQPENVE-HKNQHC 417
+ TK EEPQ +E +N+ C
Sbjct: 324 Q--GDATKGQEEPQETELEIEENEGC 347
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 331 AKKPEAGNKVTKDSEEPQPENVEHKNQHCECNN*KIIRLY 450
AKK G+ D EEP P+ K + + K+I+LY
Sbjct: 152 AKKRSIGDDHADDIEEPPPKRSRSKQESSRASPMKLIKLY 191
>12_01_0086 + 690573-690998
Length = 141
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 148 DLMRNYDLIDITLMTEVEEKRDNESCLIDETIYEDD 255
D YD++ L+ ++ +DNE C+I + EDD
Sbjct: 47 DANNKYDMLIERLLLRPKDDQDNEQCVICLSESEDD 82
>06_01_0944 +
7264833-7265120,7265511-7265600,7265702-7265798,
7265927-7265988,7266508-7266596,7266702-7266822,
7266915-7267058,7267492-7267820,7268154-7268394,
7269042-7269245,7271150-7271619,7272703-7272746,
7273121-7273211,7273494-7273596,7273682-7273783,
7274214-7274300,7274421-7274531
Length = 890
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 259 VHWPSIIELNKTEYNRIQAFLRDTAKKPEA 348
+H+P++ EL KT AFLR K P A
Sbjct: 394 IHFPALTELRKTTKLPSAAFLRSEGKCPLA 423
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,213,643
Number of Sequences: 37544
Number of extensions: 153235
Number of successful extensions: 401
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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