Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p07
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16717| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.41 
SB_21429| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_16455| Best HMM Match : Ribosomal_L40e (HMM E-Value=7.4)            31   0.71 
SB_8321| Best HMM Match : Decorin_bind (HMM E-Value=4.3)               31   0.71 
SB_3054| Best HMM Match : RVT_1 (HMM E-Value=1.6e-09)                  31   0.71 
SB_56282| Best HMM Match : Ribosomal_L40e (HMM E-Value=7.4)            31   0.71 
SB_55338| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)                  31   0.71 
SB_17913| Best HMM Match : RVP (HMM E-Value=1.1)                       31   0.71 
SB_7810| Best HMM Match : RVT_1 (HMM E-Value=2.8026e-45)               31   0.71 
SB_1334| Best HMM Match : Decorin_bind (HMM E-Value=4.7)               31   0.71 
SB_33336| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_8398| Best HMM Match : Neuromodulin (HMM E-Value=8.4)               29   1.6  
SB_2197| Best HMM Match : Uso1_p115_C (HMM E-Value=7)                  29   1.6  
SB_45708| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_28627| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_25185| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_35649| Best HMM Match : M (HMM E-Value=6e-09)                       27   8.8  
SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_38316| Best HMM Match : Syja_N (HMM E-Value=0.00032)                27   8.8  
SB_32388| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_16717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 735

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +1

Query: 211 DNESCLIDETIYEDDNVHWPSIIELNKTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQ 384
           D E   I E++ E     +   +EL K E+ +I+AFL  + K    G+KV    EEP+
Sbjct: 23  DTEEITI-ESLVEKYTAKYNCGLELWKGEFVKIEAFLAHSCKAKVTGSKVIIIKEEPK 79


>SB_21429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 840

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 235 ETIYEDDNVHWPSIIELNKTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQ 384
           E++ E     +   +EL K E+ +I+AFL  + K    G+KV    EEP+
Sbjct: 30  ESLVEKYTAKYNCGLELWKGEFVKIEAFLAHSCKAKVTGSKVIIIKEEPK 79


>SB_16455| Best HMM Match : Ribosomal_L40e (HMM E-Value=7.4)
          Length = 114

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 235 ETIYEDDNVHWPSIIELNKTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQ 384
           E++ E     +   +EL K E+ +I+AFL  + K    G+KV    EEP+
Sbjct: 30  ESLVEKYTAKYNCGLELWKGEFVKIEAFLAHSCKAKVTGSKVIIIKEEPK 79


>SB_8321| Best HMM Match : Decorin_bind (HMM E-Value=4.3)
          Length = 192

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 235 ETIYEDDNVHWPSIIELNKTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQ 384
           E++ E     +   +EL K E+ +I+AFL  + K    G+KV    EEP+
Sbjct: 30  ESLVEKYTAKYNCGLELWKGEFVKIEAFLAHSCKAKVTGSKVIIIKEEPK 79


>SB_3054| Best HMM Match : RVT_1 (HMM E-Value=1.6e-09)
          Length = 829

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 235 ETIYEDDNVHWPSIIELNKTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQ 384
           E++ E     +   +EL K E+ +I+AFL  + K    G+KV    EEP+
Sbjct: 30  ESLVEKYTAKYNCGLELWKGEFVKIEAFLAHSCKAKVTGSKVIIIKEEPK 79


>SB_56282| Best HMM Match : Ribosomal_L40e (HMM E-Value=7.4)
          Length = 114

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 235 ETIYEDDNVHWPSIIELNKTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQ 384
           E++ E     +   +EL K E+ +I+AFL  + K    G+KV    EEP+
Sbjct: 30  ESLVEKYTAKYNCGLELWKGEFVKIEAFLAHSCKAKVTGSKVIIIKEEPK 79


>SB_55338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 235 ETIYEDDNVHWPSIIELNKTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQ 384
           E++ E     +   +EL K E+ +I+AFL  + K    G+KV    EEP+
Sbjct: 30  ESLVEKYTAKYNCGLELWKGEFVKIEAFLAHSCKAKVTGSKVIIIKEEPK 79


>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
          Length = 1205

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 235 ETIYEDDNVHWPSIIELNKTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQ 384
           E++ E     +   +EL K E+ +I+AFL  + K    G+KV    EEP+
Sbjct: 30  ESLVEKYTAKYNCGLELWKGEFVKIEAFLSHSCKAKVTGSKVIIIKEEPK 79


>SB_17913| Best HMM Match : RVP (HMM E-Value=1.1)
          Length = 458

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 235 ETIYEDDNVHWPSIIELNKTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQ 384
           E++ E     +   +EL K E+ +I+AFL  + K    G+KV    EEP+
Sbjct: 30  ESLVEKYTAKYNCGLELWKGEFVKIEAFLAHSCKAKVTGSKVIIIKEEPK 79


>SB_7810| Best HMM Match : RVT_1 (HMM E-Value=2.8026e-45)
          Length = 732

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 235 ETIYEDDNVHWPSIIELNKTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQ 384
           E++ E     +   +EL K E+ +I+AFL  + K    G+KV    EEP+
Sbjct: 30  ESLVEKYTAKYNCGLELWKGEFVKIEAFLAHSCKAKVTGSKVIIIKEEPK 79


>SB_1334| Best HMM Match : Decorin_bind (HMM E-Value=4.7)
          Length = 147

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 235 ETIYEDDNVHWPSIIELNKTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQ 384
           E++ E     +   +EL K E+ +I+AFL  + K    G+KV    EEP+
Sbjct: 30  ESLVEKYTAKYNCGLELWKGEFVKIEAFLAHSCKAKVTGSKVIIIKEEPK 79


>SB_33336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 23/95 (24%), Positives = 38/95 (40%)
 Frame = +1

Query: 109 HEYYTNAKLHELYDLMRNYDLIDITLMTEVEEKRDNESCLIDETIYEDDNVHWPSIIELN 288
           HE   N    E Y    N +++D + +TE E+K+     L D+T    +    P   ++ 
Sbjct: 164 HETTGNLNAEEKYH-KNNENVLDASELTEREQKQTENDQLEDKTTQTTETPQKPKQHDVA 222

Query: 289 KTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQPEN 393
           +T  N  +    +   K EA     K S +    N
Sbjct: 223 ETNVNTRRRKKENARFKDEATGSSRKQSSDDDVYN 257


>SB_8398| Best HMM Match : Neuromodulin (HMM E-Value=8.4)
          Length = 234

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +1

Query: 253 DNVHWPSIIELNKTEYNRIQAF----LRDTAKKPEAGNKVTKDSEEPQPENVEHKNQHCE 420
           D+ H    +E+NK E  +   F    + +T   PE+ +K+  D   P      H+NQ   
Sbjct: 42  DSSHVEKSVEINKNE-TKASGFCNESVENTGNDPESLHKINTDKTNPDKSENTHENQRQN 100

Query: 421 CNN 429
            N+
Sbjct: 101 RND 103


>SB_2197| Best HMM Match : Uso1_p115_C (HMM E-Value=7)
          Length = 272

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +1

Query: 253 DNVHWPSIIELNKTEYNRIQAF----LRDTAKKPEAGNKVTKDSEEPQPENVEHKNQHCE 420
           D+ H    +E+NK E  +   F    + +T   PE+ +K+  D   P      H+NQ   
Sbjct: 2   DSSHVEKSVEINKNE-TKASGFCNESVENTGNDPESLHKINTDKTNPDKSENTHENQRQN 60

Query: 421 CNN 429
            N+
Sbjct: 61  RND 63


>SB_45708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1510

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 235 ETIYEDDNVHWPSIIELNKTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQ 384
           E++ E     +   +EL K E+ +I AFL  + K    G+KV    EEP+
Sbjct: 30  ESLVEKYTAKYNCGLELWKGEFVKIGAFLAHSCKAKVTGSKVIIIKEEPK 79


>SB_28627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 283 LNKTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQP 387
           L KTE  + +AF  +T KK  A     KD EE  P
Sbjct: 555 LTKTEAQKKEAFWLNTQKKRSARKHFRKDCEETPP 589


>SB_25185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +1

Query: 193 EVEEKRDNESCLIDETIYEDDNVHWPSIIELN----KTEYNRIQAFLRDTAKKPEAGNKV 360
           E E + D++   I++  +E+   H  +  E+     KTE  + +    + AK+ EA  + 
Sbjct: 12  ETETEEDDQVMGIEKG-HEEAGTHAENEKEVKGEEAKTEEAKTEEAKTEEAKREEAKREE 70

Query: 361 TKDSEEPQPENVEHKNQ 411
            +  +EPQ EN E + +
Sbjct: 71  VETKDEPQGENREEETK 87


>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
          Length = 1279

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +1

Query: 241 IYEDDNVHWPSIIELNKTEYNRIQAFLRDTAK---KPEAGNKVTKDSEEPQPENVEHKNQ 411
           I ED      S+++    E  R++  L +  +   K +AGNK  K+SEE + E  E K  
Sbjct: 315 IIEDKLQATESMVQEQSGERERLEGHLAEITEELSKEKAGNKELKNSEEQKAE--EEKKA 372

Query: 412 HCECNN 429
             + N+
Sbjct: 373 KRDAND 378


>SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 280 ELNKTEYNRIQAFLRDTAKKPEAGNKVTKDSEEPQPENVEHKNQHCECN 426
           + NKT  N ++A       +P   NKV    E  Q   V++K +  + N
Sbjct: 545 QTNKTSQNPLRANKVQYKPEPSQANKVQYKPEPSQANKVQYKPETSQAN 593


>SB_38316| Best HMM Match : Syja_N (HMM E-Value=0.00032)
          Length = 567

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 23/88 (26%), Positives = 33/88 (37%)
 Frame = +1

Query: 148 DLMRNYDLIDITLMTEVEEKRDNESCLIDETIYEDDNVHWPSIIELNKTEYNRIQAFLRD 327
           DL    D  +I    E  E R N     D+            + E +K E   +    RD
Sbjct: 230 DLTDTQDKTNINADRETLEVRRNMDGQQDQDDKGGQITSTLKLSEESKPEEKEVDVSDRD 289

Query: 328 TAKKPEAGNKVTKDSEEPQPENVEHKNQ 411
            AKK +  +  +K+S +  PE  E   Q
Sbjct: 290 LAKKQQKQDHRSKESTQRDPEGREKAKQ 317


>SB_32388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +1

Query: 322 RDTAKKPEAGNKVTKDSEEPQPENVEHKNQHCECNN*KIIRLYNTKKKIVIKEK 483
           R+  K+ E GNK+++DS+   P   + K  + E  + K   + + K++IV +E+
Sbjct: 4   REKEKEKEEGNKISEDSQTTSPSQ-DAKEVNSESED-KENHVGDDKEQIVTEEQ 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,712,102
Number of Sequences: 59808
Number of extensions: 207264
Number of successful extensions: 650
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)