Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p06
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224           31   0.39 
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498...    30   0.90 
09_04_0598 + 18875270-18875437,18875547-18876179                       29   1.2  
08_02_1288 + 25902264-25902431,25902506-25903090                       28   3.6  
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    27   4.8  
04_04_0671 - 27157692-27158620,27158711-27158828,27158967-271591...    27   6.3  
07_03_1425 + 26489446-26491425                                         27   8.3  
06_03_1237 + 28602250-28604196                                         27   8.3  

>02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224
          Length = 508

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 103 LFSTS*SCTS*YRPIRRPERQLLLRRISDCDARSWKSAPTF 225
           +F     CT    P RRP  Q +LRR+  C AR W+  P F
Sbjct: 469 VFKLGVECTM-MDPQRRPSMQTVLRRLRQC-ARWWRRFPCF 507


>03_06_0565 +
           34747278-34748066,34748170-34748406,34749777-34749869,
           34751752-34751988,34752398-34752584,34752956-34753028,
           34753145-34753289,34753670-34753779,34754127-34754258,
           34754328-34754469,34754545-34754679,34756278-34756435,
           34757327-34757401,34757505-34757643,34757838-34757952,
           34758016-34758107,34758500-34758613
          Length = 990

 Score = 29.9 bits (64), Expect = 0.90
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 197 PDPGSLPLLSQTPSLVVKCDQEGD 268
           P+P S P+LS  PS++ +C Q  D
Sbjct: 290 PEPFSRPILSANPSIIARCLQPSD 313


>09_04_0598 + 18875270-18875437,18875547-18876179
          Length = 266

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -2

Query: 249 LTTRLGV*ESRGRLPGSGVTVGNPPQEQLPFRSSNGAILTGTTSASRK*LIPTNMRMQMS 70
           L T  G+  +  RL    +T  N  +  L  +S    I+  T  A+   L  T +   +S
Sbjct: 36  LRTAAGINSATRRLWAISMTKDNEKKAVLVVQSLRNVIMGSTLVATTAILFCTGIAAVLS 95

Query: 69  QKYTLKEPI 43
             YT+K+P+
Sbjct: 96  STYTIKKPL 104


>08_02_1288 + 25902264-25902431,25902506-25903090
          Length = 250

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -2

Query: 249 LTTRLGV*ESRGRLPGSGVTVGNPPQEQLPFRSSNGAILTGTTSASRK*LIPTNMRMQMS 70
           L++ +G+  +  RL   G+   N  +  L  +S    I+  T  A+   L  T +   +S
Sbjct: 36  LSSTVGINTATRRLWVLGMMKDNEKKAVLVVQSMRNVIMGSTLMATTAILFCTGVAAILS 95

Query: 69  QKYTLKEPI 43
             YT+K+P+
Sbjct: 96  STYTVKKPL 104


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 20/79 (25%), Positives = 34/79 (43%)
 Frame = +2

Query: 44  MGSLRVYFCDICILMLVGINYFLLAEVVPVSIAPFEDRKGNCSCGGFPTVTPDPGSLPLL 223
           + S+   F D   L+++ ++  L AE +  + A     +    CGG   V P   S    
Sbjct: 9   VASICAAFYDSIWLLVLLLSTALAAETLDGAQAASSQCQNATKCGGVDIVYPFGLSSSGC 68

Query: 224 SQTPSLVVKCDQEGDNTCK 280
           + +PS  V C+  G+   K
Sbjct: 69  AMSPSFEVDCNNTGNGVQK 87


>04_04_0671 -
           27157692-27158620,27158711-27158828,27158967-27159156,
           27159281-27159415,27159537-27159634,27160034-27160206,
           27160299-27160772,27161464-27161518
          Length = 723

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 32  NEHKMGSLRVYFCDICILMLVGINYFLLAEVVPVSIAPFEDR 157
           +E  M  L  Y   ICI +LVG  ++   +V+ V++    +R
Sbjct: 364 SESSMSGLFGYKSFICIALLVGDGFYNFVKVIVVTLKSVRER 405


>07_03_1425 + 26489446-26491425
          Length = 659

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 182 FPTVTPDPGSLPLLSQTPSLVVKCDQEGDNTCKILCNALXTATKAKGP 325
           F  V  +P S P   Q    +  C  +G    ++ CNA    T A GP
Sbjct: 577 FGGVMAEPISAPNQFQPYGDLYVCRLDGSGLVRLTCNAYENGTPAWGP 624


>06_03_1237 + 28602250-28604196
          Length = 648

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 68  CDICILMLVGINYFLLAEVVPVSIAPFEDRK-GNCSCGGF 184
           CD C L +  ++     E++      F   K G CSCGGF
Sbjct: 608 CDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGF 647


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,086,391
Number of Sequences: 37544
Number of extensions: 217977
Number of successful extensions: 571
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)