Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p06
         (427 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)             34   0.043
SB_19940| Best HMM Match : Drf_FH1 (HMM E-Value=0.97)                  31   0.40 
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026)          28   2.8  
SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)                27   6.5  

>SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
          Length = 350

 Score = 34.3 bits (75), Expect = 0.043
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +3

Query: 36  NIRWAP*GYIFATFAFSCWSGLIIFY*LKLYQLVSPHS---KTGKATALAEDFRL*RQIL 206
           ++ WA   Y+  T +F     LI+F  +K+YQ+ +  S   +TG  T    DFR  RQ++
Sbjct: 167 HVTWAHKAYLIVTLSFFVPLALIVFSYVKIYQVKTATSSLRRTG-GTKFKRDFRTARQMI 225

Query: 207 EVCPYFL 227
            V   F+
Sbjct: 226 IVIGSFI 232


>SB_19940| Best HMM Match : Drf_FH1 (HMM E-Value=0.97)
          Length = 494

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 222 SRGRLPGSGVTVGNPPQEQLPFRSSNGAILTGTTSASR 109
           ++G  PG+G+ +  PP+  LP  +S   +LT T + S+
Sbjct: 176 TKGNKPGTGIIMRPPPKVSLPASASQVKLLTKTVAISQ 213


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +2

Query: 182  FPTVTPD--PGSLPLLSQTPSLV-VKCDQEGDNTCKI 283
            F  VT D  PG L L  + PS   +KC   GD +C +
Sbjct: 1981 FTVVTRDAGPGGLSLAVEGPSKAEIKCQDNGDGSCNV 2017


>SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026)
          Length = 766

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 59  VYFCDICILMLVGINYFLLAEVVPVSIAPFEDRKGNCSCG 178
           V   D+C++ L+  +    AE +   + PF+D +  C+ G
Sbjct: 563 VCMVDVCMVHLISFSSVEEAESIITCVKPFKDSRTRCNSG 602


>SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)
          Length = 825

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 216 GRLPGSGVTVGNPPQEQLPFRSSNGAIL 133
           GRLP  G          LP++SSNG I+
Sbjct: 99  GRLPILGYAESQSSPSSLPYKSSNGTIV 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,989,390
Number of Sequences: 59808
Number of extensions: 255735
Number of successful extensions: 557
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)