Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10p06
(427 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62420.1 68414.m07042 expressed protein contains Pfam profile... 30 0.75
At2g28970.1 68415.m03524 leucine-rich repeat protein kinase, put... 29 1.3
At4g33290.1 68417.m04736 F-box family protein contains Pfam PF00... 27 5.3
At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identi... 27 5.3
At2g26160.1 68415.m03139 F-box family protein contains F-box dom... 27 5.3
At2g23030.1 68415.m02746 protein kinase, putative similar to pro... 27 5.3
At5g06940.1 68418.m00784 leucine-rich repeat family protein cont... 26 9.3
At3g19500.1 68416.m02471 ethylene-responsive protein -related co... 26 9.3
At1g29800.1 68414.m03643 zinc finger (FYVE type) family protein ... 26 9.3
>At1g62420.1 68414.m07042 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 465
Score = 29.9 bits (64), Expect = 0.75
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +2
Query: 176 GGFPTVTPDPGSLPLLSQTPSLVVKCDQEGDNTCKILCNALXTATKAKGPEILCSRLKDV 355
G F P L +LSQ P + V +E +I+C+ + + K G + R
Sbjct: 164 GEFEIARPTKRYLSILSQVPRVFVGTSEELKLLVRIMCHEMRRSMKHVGIHVPPWRRNGY 223
Query: 356 NELKLSAFYK 385
+ K FYK
Sbjct: 224 MQAKWFGFYK 233
>At2g28970.1 68415.m03524 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 786
Score = 29.1 bits (62), Expect = 1.3
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Frame = +2
Query: 176 GGFPTVTPDPGSLPLLSQTPSLVVKCDQEGDN---------TCKILCNALXTATKAKGPE 328
G F P L LL+ S V+CD +G N T L NAL T + P+
Sbjct: 198 GNFNYSAFSPTKLELLTFFTSGPVQCDSDGCNLQLVRTPNSTLPPLINALEAYTIIEFPQ 257
Query: 329 ILCSRLKDVNELK-LSAFYKTCDKPW 403
+ S L DVN +K + A Y+ W
Sbjct: 258 LETS-LSDVNAIKNIKATYRLSKTSW 282
>At4g33290.1 68417.m04736 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 430
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 80 ILMLVGINYFLLAEVVPVSIAPFEDRKGNCSC 175
++ML+ N FL++ V+ + P + KG SC
Sbjct: 59 VIMLIDYNLFLMSAVLMDDVDPSIEFKGKLSC 90
>At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identical
to CLC-b chloride channel protein GB:CAA96058 from
[Arabidopsis thaliana] (J. Biol. Chem. 271 (52),
33632-33638 (1996))
Length = 780
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 14 YSFNIENEHKMGSLRVYFCDICILML 91
+S N NE MGSL ++F CIL L
Sbjct: 442 FSSNTPNEFGMGSLWIFFVLYCILGL 467
>At2g26160.1 68415.m03139 F-box family protein contains F-box domain
Pfam:PF00646
Length = 359
Score = 27.1 bits (57), Expect = 5.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 262 FLITFDDQTWCLRK*GQTSRIW 197
F + DD+ WC + ++SRIW
Sbjct: 160 FAVGQDDKIWCCKSGEESSRIW 181
>At2g23030.1 68415.m02746 protein kinase, putative similar to
protein kinase 3 [Glycine max] GP|310582|gb|AAB68961
Length = 339
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 291 MHXQQLRKQKALKFSAAGLKMSTNLSFQLFTKRATNH 401
M +Q + A+KF G K+ N++ ++ RA NH
Sbjct: 21 MRNKQTNELVAVKFIDRGYKIDENVAREIINHRALNH 57
>At5g06940.1 68418.m00784 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 872
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 8 STYSFNIENEHKMGSLRVYFCDICILMLVGINYFLLAEVVP 130
S Y F+ G L FCD +L +V I++ L +P
Sbjct: 390 SLYKFSASQNRFSGELPPNFCDSPVLSIVNISHNRLLGKIP 430
>At3g19500.1 68416.m02471 ethylene-responsive protein -related
contains similarity to ethylene-inducible ER33 protein
[Lycopersicon esculentum] gi|5669656|gb|AAD46413
Length = 270
Score = 26.2 bits (55), Expect = 9.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 123 LYQLVSPHSKTGKATALAEDFR----L*RQILEVC-PYFLKHQV 239
L QLVSP+ KT A+ L E L QI +C PY + H +
Sbjct: 167 LQQLVSPYGKTDAASVLHEAMGYIKFLQDQIQVLCSPYLINHSL 210
>At1g29800.1 68414.m03643 zinc finger (FYVE type) family protein
contains Pfam domain PF01363: FYVE zinc finger
Length = 433
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 68 CDICILMLVGINYFLLAEVVPVSIAPFED 154
CD+C + L + +L+ +V P + P D
Sbjct: 162 CDVCFVRLESVQPYLMDQVSPAAQLPTHD 190
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,029,534
Number of Sequences: 28952
Number of extensions: 178519
Number of successful extensions: 472
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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