Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10p01
(291 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 0.56
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 3.0
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 24 3.9
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 24 3.9
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 24 3.9
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 24 3.9
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 24 3.9
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 23 6.9
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 23 6.9
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 23 9.1
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.1 bits (57), Expect = 0.56
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 18 WRKSFIFAKTSRYLYFCECLNVGPRVRKCN 107
W K F+ K S++ C+ +N R KCN
Sbjct: 1499 WSKIFLGFKPSKFPELCKDINPEQRTYKCN 1528
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 3.0
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +2
Query: 116 RRLKCRDTLPSELQRTSLQENGDEKPIFSS*TEKTHSKLFSSGSS 250
RR K DT PS + S + DE+ ++SS S FSS SS
Sbjct: 309 RRSKYADT-PSPRRSRSYSDE-DEESVYSSDVSTESSSQFSSRSS 351
>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 100
Score = 24.2 bits (50), Expect = 3.9
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 257 F*SYFH*KTILSVFFPFNLK-ILAFHRR 177
F SYFH LS FPF LAF RR
Sbjct: 26 FHSYFHIPDFLSFVFPFVASPPLAFARR 53
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 24.2 bits (50), Expect = 3.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 143 VMCPYISDGANVVALTNPRSHIKTLAEIE 57
VM IS GA A+TNP +KT ++E
Sbjct: 214 VMSGLIS-GATATAITNPFDMLKTRVQLE 241
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 24.2 bits (50), Expect = 3.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 9 SPSWRKSFIFAKTSRYLYFCECLNVGPRVRKCNNIG 116
SP R S + S C +NVG + C N G
Sbjct: 85 SPKIRLSLRHVEKSWACKICTFINVGDPINPCRNCG 120
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 24.2 bits (50), Expect = 3.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 159 EPLYRKTAMKSQYFQVKRK--KHTQNCFLVEVASKLH*NNMT 278
E L +KT K +F+ K+K KH + F +K++ MT
Sbjct: 1337 EKLQKKTDNKKPFFKKKKKKRKHLKKFFDFNTTAKVNEGAMT 1378
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 24.2 bits (50), Expect = 3.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +3
Query: 6 GSPSWRKSFIFAKTSRYL----YFCECLNVGPRVRK 101
G P+ KS+I +K SRY Y C +VG + R+
Sbjct: 150 GIPATGKSYIGSKLSRYYNWLKYNCRFFSVGDKRRE 185
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 23.4 bits (48), Expect = 6.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 285 F*MSYYFNVILKLLPLENNFECVFSV*LENIG 190
F +Y+FNV+L + L + +E S NIG
Sbjct: 93 FHSTYFFNVLLPPIILNSGYELHQSNFFRNIG 124
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 23.4 bits (48), Expect = 6.9
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -2
Query: 200 KILAFHRRFPVKRFFEVRKVMCPYISDGANVVALTNPRSHIK 75
++L+ + FP+ + + + +C ++S ANV SH K
Sbjct: 284 ELLSHNEYFPMMKRGFISRFLCLFVSRDANVYIGPLESSHAK 325
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 23.0 bits (47), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 197 FSS*TEKTHSKLFSSGSSFKITLK*Y 274
FS+ TE++ + SS SS K+T+ Y
Sbjct: 308 FSNSTERSAQNISSSISSLKLTMSTY 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,250,533
Number of Sequences: 5004
Number of extensions: 23424
Number of successful extensions: 61
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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