Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p01
         (291 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48020| Best HMM Match : GATA (HMM E-Value=2.6)                      29   0.65 
SB_33552| Best HMM Match : MIF (HMM E-Value=9.7)                       29   0.65 
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     28   1.1  
SB_37225| Best HMM Match : LRR_1 (HMM E-Value=2.6e-11)                 28   1.5  
SB_25999| Best HMM Match : rve (HMM E-Value=4.8e-35)                   27   2.6  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    27   3.5  
SB_18884| Best HMM Match : GPW_gp25 (HMM E-Value=0.84)                 26   4.6  
SB_42689| Best HMM Match : Spectrin (HMM E-Value=0)                    26   6.1  
SB_7681| Best HMM Match : Annexin (HMM E-Value=0)                      26   6.1  
SB_15664| Best HMM Match : 7tm_1 (HMM E-Value=0)                       25   8.0  
SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)               25   8.0  
SB_45153| Best HMM Match : rve (HMM E-Value=0)                         25   8.0  
SB_36159| Best HMM Match : Peptidase_M28 (HMM E-Value=0)               25   8.0  
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)           25   8.0  

>SB_48020| Best HMM Match : GATA (HMM E-Value=2.6)
          Length = 173

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 128 ISDGANVVALTNPRSHIKTLAEIEVPTRFGKN 33
           I+DG  VVA+  P+ H   + E EVP+R  +N
Sbjct: 104 IADGLEVVAVEPPQHHQLEVIEEEVPSRNTRN 135


>SB_33552| Best HMM Match : MIF (HMM E-Value=9.7)
          Length = 148

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 171 RKTAMKSQYFQVKRKKHTQNCFLVEV 248
           RKT M SQ ++ + + H  +CFL E+
Sbjct: 109 RKTKMMSQGYRARIRNHGHSCFLCEI 134


>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 55  YLLVLAKIKLFRQDGDP 5
           YLLVLA+++L R D DP
Sbjct: 480 YLLVLARLQLLRMDADP 496


>SB_37225| Best HMM Match : LRR_1 (HMM E-Value=2.6e-11)
          Length = 497

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 9   SPSWRKSFIFAKTSRYLYFCECLNVGPRVRKCNNI 113
           S S R+SF  A  S YL  C+ LNV P      NI
Sbjct: 73  STSGRRSFDLAGKSAYLRACKTLNVTPISSLLQNI 107


>SB_25999| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 419

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 101 VQQHWRRLKCRDTLPSELQR 160
           VQQ+W + +C+   PS  QR
Sbjct: 394 VQQNWPKFQCKQLYPSRFQR 413


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 129 VGTHYLPNFKEPLYRKTAMKS 191
           +G HY+P  KE LY KT  ++
Sbjct: 404 MGPHYVPGKKEDLYLKTIQRT 424


>SB_18884| Best HMM Match : GPW_gp25 (HMM E-Value=0.84)
          Length = 486

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 12  PSWRKSFIFAKTSRYLYFCECLNVGPRVRKCNNIGAV 122
           PS    F + +T+ Y +F  CL +   +R C+   A+
Sbjct: 71  PSGVTEFKYKQTNMYCFFQFCLQIACLLRTCSGPSAI 107


>SB_42689| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1317

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 150 NFKEPLYRKTAMKSQYFQVKR--KKHTQNCFLVEVASK 257
           N KEPL + T   +  F+V++  KKH   C  +++  K
Sbjct: 568 NEKEPLLQSTNYGNNLFEVQKLQKKHQTLCAEIDIHQK 605


>SB_7681| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 426

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 146 SELQRTSLQENGDEKPIFSS*TEKTHSKLFSSGSSFKITLK 268
           +E +R  +  NG+E+ I SS    TH K  S  +  + TLK
Sbjct: 231 AETKRADIAMNGEEEQIDSSRESPTHEKK-SGENGVQFTLK 270


>SB_15664| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 356

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 257 F*SYFH*KTILSVFFPFNLKILAFHRRFPVKRFFEVRKVMCPYISD 120
           F +Y H     S F P +  ++ + R + V R ++ R++   Y +D
Sbjct: 176 FPNYLHLNATFSFFLPLSFMVMMYARIYLVAR-YQARRIGKNYATD 220


>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
          Length = 1084

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 227 LSVFFPFNLKILAFHRRFPVKRFFEVRKVMCPYISDGANVVALTNPRSHIKTL 69
           L+VF+P N   +A   R+  +RF+ V  V+     D    V    P + IK L
Sbjct: 38  LNVFYPVNSTSVATVNRYQGRRFWLVSNVLLYKDGDPVLKVERGTPLTVIKML 90


>SB_45153| Best HMM Match : rve (HMM E-Value=0)
          Length = 2264

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 104  QQHWRRLKCRDTLPSELQR 160
            QQ+W + +C+   PS  QR
Sbjct: 2168 QQNWPKFQCKQLYPSRFQR 2186


>SB_36159| Best HMM Match : Peptidase_M28 (HMM E-Value=0)
          Length = 771

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 101 LTNPRSHIKTLAEIEVPTRFGKNKTFSPRWRS 6
           L + +S  +TLA+I VP + G +     RWR+
Sbjct: 18  LASLKSINQTLAQIVVPAKLGASDYLRWRWRN 49


>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
          Length = 456

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 252 KLLPLENNFECVFSV*LENIGFSSPFSCKEVL*SSEGNVSLH 127
           KLLP+E   EC+F++  E     + F  K  L SS  +V ++
Sbjct: 185 KLLPVEGAVECLFAMGFEETQSQAQFYAK--LKSSSDHVMIY 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,962,719
Number of Sequences: 59808
Number of extensions: 165002
Number of successful extensions: 303
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 328507322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)