Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p01
         (291 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormo...    27   2.2  
AL132859-1|CAB60494.1|  276|Caenorhabditis elegans Hypothetical ...    26   3.9  
Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical pr...    26   5.2  
Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical pr...    26   5.2  
Z81550-7|CAH60764.1|  581|Caenorhabditis elegans Hypothetical pr...    25   6.8  
Z70211-6|CAH60769.1|  581|Caenorhabditis elegans Hypothetical pr...    25   6.8  
L09634-1|AAA27967.1|  776|Caenorhabditis elegans Hypothetical pr...    25   6.8  
AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical...    25   6.8  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    25   9.1  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    25   9.1  
Z66519-8|CAA91379.1|  182|Caenorhabditis elegans Hypothetical pr...    25   9.1  
Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    25   9.1  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      25   9.1  
AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear horm...    25   9.1  

>AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 119 protein.
          Length = 388

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 24  KSFIFAKTSRYLYFCECLNVG 86
           K+F+  KTSR+  F +C+ VG
Sbjct: 86  KNFLIPKTSRFCRFKKCIEVG 106


>AL132859-1|CAB60494.1|  276|Caenorhabditis elegans Hypothetical
          protein Y39C12A.1 protein.
          Length = 276

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 27 SFIFAKTSRYLYFCECLNV 83
          S +FAKTS  L+FC C  V
Sbjct: 6  SSLFAKTSILLHFCLCFQV 24


>Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical
           protein F28F8.2 protein.
          Length = 618

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 126 NVGTHYLPNFKEPLYRKTAMKSQYFQVKRKKHT 224
           NV  HYL      + RKT MK   F  KR KH+
Sbjct: 140 NVNPHYLHEELRFVMRKTGMK-VLFAPKRHKHS 171


>Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical
           protein F54C9.9 protein.
          Length = 740

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 164 SLQENGDEKPIFS 202
           ++QEN DEKPIFS
Sbjct: 396 NIQENEDEKPIFS 408


>Z81550-7|CAH60764.1|  581|Caenorhabditis elegans Hypothetical
           protein K11E4.5b protein.
          Length = 581

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 168 YRKTAMKSQYFQVKRKKHTQNCFL 239
           +R+T ++   FQ  R KHT  C +
Sbjct: 34  FRRTVVEKALFQEYRCKHTNTCLI 57


>Z70211-6|CAH60769.1|  581|Caenorhabditis elegans Hypothetical
           protein K11E4.5b protein.
          Length = 581

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 168 YRKTAMKSQYFQVKRKKHTQNCFL 239
           +R+T ++   FQ  R KHT  C +
Sbjct: 34  FRRTVVEKALFQEYRCKHTNTCLI 57


>L09634-1|AAA27967.1|  776|Caenorhabditis elegans Hypothetical
           protein C30C11.4 protein.
          Length = 776

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 116 RRLKCRDTLPSELQRT--SLQENGDEKPIFSS*TEKTHSKLFS 238
           R    +DT P  ++ +  S  ENG E  +FS   E   SKL S
Sbjct: 393 REFAIKDTQPYRIRLSWNSTGENGGENDVFSPRDEVPFSKLVS 435


>AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical
           protein T24E12.1 protein.
          Length = 507

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -1

Query: 108 CCTYEPEVPH*D--TRRNRGTYSFWQ 37
           CC ++PE+PH     +R    YS +Q
Sbjct: 165 CCLFDPEIPHVPQFKKRPANGYSLYQ 190


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
            protein C02F4.1 protein.
          Length = 1781

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 116  RRLKCRDTLPSELQRTSLQENGDEKPIF 199
            RR+K  D+LP++L+ T + E  D  PI+
Sbjct: 1479 RRIKTADSLPTDLRFTEIVELSD--PIY 1504


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
            C02F4.1 protein.
          Length = 1781

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 116  RRLKCRDTLPSELQRTSLQENGDEKPIF 199
            RR+K  D+LP++L+ T + E  D  PI+
Sbjct: 1479 RRIKTADSLPTDLRFTEIVELSD--PIY 1504


>Z66519-8|CAA91379.1|  182|Caenorhabditis elegans Hypothetical
           protein B0334.10 protein.
          Length = 182

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 104 ALTNPRSHIKTLAEIEVPTRFGKNKTF 24
           AL NP++ ++TLA  E  ++  + KT+
Sbjct: 136 ALCNPKTKVETLAHGETKSKSSEMKTY 162


>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 122 LKCRDTLPSELQRTSLQENGDEKPIFSS*TE---KTHSKLFSSGSS 250
           L+    +PS LQ   LQ    + P+++S  +    + S LFSS SS
Sbjct: 146 LQAASHIPSMLQLCQLQPTTIQSPVYASTQQPASTSASSLFSSSSS 191


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 116  RRLKCRDTLPSELQRTSLQENGDEKPIF 199
            RR+K  D+LP++L+ T + E  D  PI+
Sbjct: 1479 RRIKTADSLPTDLRFTEIVELSD--PIY 1504


>AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 260 protein.
          Length = 398

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 27  SFIFAKTSRYLYFCECLNVGPR 92
           SF +    RY  F +CLNVG R
Sbjct: 86  SFTYRCACRYCRFQKCLNVGMR 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,910,579
Number of Sequences: 27780
Number of extensions: 132647
Number of successful extensions: 299
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)