Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p01
         (291 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28230.1 68417.m04045 expressed protein                             29   0.54 
At1g64840.1 68414.m07351 F-box family protein contains Pfam:PF00...    28   1.2  
At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA synt...    27   1.6  
At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA synt...    27   1.6  
At2g43600.1 68415.m05419 glycoside hydrolase family 19 protein s...    26   3.8  
At2g07390.1 68415.m00846 hypothetical protein                          26   3.8  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    26   5.0  

>At4g28230.1 68417.m04045 expressed protein 
          Length = 402

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 119 RLKCRDTLPSELQRTSLQENGDEKPI 196
           R+K R  +PSE+   S  ENGDE PI
Sbjct: 331 RVKKRWEIPSEVDLYSSGENGDESPI 356


>At1g64840.1 68414.m07351 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 384

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = +1

Query: 16  LGEKVLFLPKRVGTSISASVLMWDLGFVSATTLAPSEM*GHITFRTSKNLFTGKRR*KAN 195
           LG++VLF+        SA  L    G VS  ++  +   G++TF     + TG+   + N
Sbjct: 292 LGDRVLFIGHFGNVCCSAKELPDGCG-VSGNSILFTNEPGYVTFAYKYGVHTGRAEDELN 350

Query: 196 IFKLNGKNTLKIV 234
           I++ + +  + IV
Sbjct: 351 IWRFSREIRVMIV 363


>At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to fatty acid elongase
           3-ketoacyl-CoA synthase 1 GB:AAC99312 [Arabidopsis
           thaliana]
          Length = 459

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 103 HLRTRGP-TLRHSQK*RYLLVLAKIKLFRQDGDPY 2
           +L   GP  L  S+K R++L L K KLFR    PY
Sbjct: 308 NLTALGPLVLPLSEKLRFILFLVKSKLFRLKVSPY 342


>At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to GI:4091810; contains Pfam
           profile PF02797: Chalcone and stilbene synthases,
           C-terminal domain
          Length = 466

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 103 HLRTRGP-TLRHSQK*RYLLVLAKIKLFRQDGDPY 2
           +L   GP  L  S+K R++L L K KLFR    PY
Sbjct: 315 NLTALGPLVLPLSEKLRFILFLVKSKLFRLKVSPY 349


>At2g43600.1 68415.m05419 glycoside hydrolase family 19 protein
           similar to basic endochitinase CHB4 precursor SP:Q06209
           from [Brassica napus]
          Length = 273

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 15  SWRKSFIFAKTSRYLYFCECLNVGP 89
           +WR+     K  +Y+ FCE L V P
Sbjct: 243 NWRRDDTKNKVKQYIEFCEMLGVTP 267


>At2g07390.1 68415.m00846 hypothetical protein
          Length = 137

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 74 TLAEIEVPTRFGKNK 30
          TLAEI + TR+GKN+
Sbjct: 26 TLAEIRIRTRYGKNR 40


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 134  DTLPSELQRTSLQENGDEKPIFSS*TEKTHSKLF 235
            DTLP EL R  L   GD K I        H  +F
Sbjct: 1672 DTLPLELSRMELYGWGDSKAICEKSKSVRHEGMF 1705


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,345,074
Number of Sequences: 28952
Number of extensions: 116111
Number of successful extensions: 251
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 271967544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)