Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o24
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0174 + 28156399-28156525,28157094-28157155,28157428-28158615     27   9.6  
01_06_1156 + 34974727-34974833,34975110-34975217,34978124-34978706     27   9.6  

>05_07_0174 + 28156399-28156525,28157094-28157155,28157428-28158615
          Length = 458

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 423 YFVNELKKV*LSRLKLHHMILVVD 352
           +FV +LK V + RL LH   LVVD
Sbjct: 258 HFVTKLKNVFVCRLALHQADLVVD 281


>01_06_1156 + 34974727-34974833,34975110-34975217,34978124-34978706
          Length = 265

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 268 DSARWGSYANRAIQASSKKLKDRTLY*CIYHQNH 369
           D  +W  Y  + I+ +S     R  Y C YHQ+H
Sbjct: 53  DGYQWRKYGQKMIRGNSFP---RCYYRCTYHQDH 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,770,026
Number of Sequences: 37544
Number of extensions: 161149
Number of successful extensions: 270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)