Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o24
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22909| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_30216| Best HMM Match : TIL (HMM E-Value=3.1)                       27   9.9  
SB_54042| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_22909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 384 LKLHHMILVVDALVKRSIFKLL*GRLNSSVSIT 286
           LK H+ ++VVDALV  S + +  G+ N  + IT
Sbjct: 225 LKTHNELMVVDALVNASWYNI--GKFNKQLGIT 255


>SB_30216| Best HMM Match : TIL (HMM E-Value=3.1)
          Length = 212

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 145 VKISKYNKYFVQTKEACASKNLI 77
           V+    +K+ V+T+EAC SK LI
Sbjct: 146 VRSCPMDKHHVETREACVSKGLI 168


>SB_54042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 256 PPVLANHYDMVPNYR-GIWI 200
           PP L + Y + PNYR G WI
Sbjct: 78  PPKLLSDYALFPNYRHGFWI 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,765,245
Number of Sequences: 59808
Number of extensions: 209614
Number of successful extensions: 392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)