Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10o23
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 66 3e-11
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 66 3e-11
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 65 4e-11
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 64 8e-11
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 59 3e-09
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 59 3e-09
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 59 3e-09
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 58 6e-09
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 58 6e-09
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 57 1e-08
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 54 9e-08
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 54 9e-08
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 54 9e-08
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 50 1e-06
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 50 2e-06
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 49 3e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 49 3e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 49 3e-06
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 48 8e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 47 1e-05
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 47 1e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 46 2e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 2e-05
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 44 7e-05
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 44 1e-04
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 44 1e-04
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 44 1e-04
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 43 2e-04
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 43 2e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 43 2e-04
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 43 2e-04
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 43 2e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 43 2e-04
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 42 3e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 42 3e-04
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 42 4e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 42 4e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 42 4e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 42 4e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 42 5e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 42 5e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 41 7e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 41 7e-04
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 41 7e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 41 7e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 41 7e-04
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 41 0.001
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 41 0.001
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 41 0.001
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 41 0.001
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 41 0.001
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 41 0.001
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 41 0.001
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 41 0.001
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 41 0.001
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 41 0.001
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 40 0.001
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 40 0.001
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 40 0.002
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 40 0.002
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 40 0.002
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 40 0.002
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 39 0.003
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 39 0.003
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 39 0.003
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 39 0.003
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 39 0.004
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 38 0.005
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 38 0.006
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 38 0.008
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 38 0.008
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 38 0.008
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 38 0.008
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 38 0.008
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 38 0.008
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 38 0.008
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 37 0.011
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 37 0.011
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 37 0.011
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 37 0.015
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.015
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 37 0.015
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 36 0.019
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 36 0.026
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 36 0.026
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 36 0.026
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 36 0.026
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 36 0.026
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 36 0.026
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 36 0.026
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 36 0.034
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.034
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 36 0.034
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 36 0.034
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.034
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 35 0.045
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 35 0.045
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 35 0.045
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 35 0.045
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 35 0.059
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 35 0.059
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 35 0.059
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 35 0.059
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 35 0.059
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 34 0.078
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 34 0.10
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 34 0.10
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 33 0.14
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 33 0.14
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.14
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 33 0.14
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 33 0.18
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 33 0.18
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 33 0.18
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.18
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 33 0.18
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 33 0.18
At2g47310.1 68415.m05906 flowering time control protein-related ... 33 0.24
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 32 0.32
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.32
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 32 0.32
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.32
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 32 0.32
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 32 0.32
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 32 0.32
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 32 0.42
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 32 0.42
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 32 0.42
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.55
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.55
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 31 0.55
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 31 0.55
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 31 0.55
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 31 0.73
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 31 0.73
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 31 0.73
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 31 0.73
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 31 0.73
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 31 0.96
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 31 0.96
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 31 0.96
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 0.96
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 31 0.96
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 0.96
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 30 1.3
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 30 1.3
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 30 1.3
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 30 1.7
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 30 1.7
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 30 1.7
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 30 1.7
At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,... 30 1.7
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 30 1.7
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 29 2.2
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 29 2.2
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 2.2
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 29 2.2
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 29 2.2
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 2.9
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 29 2.9
At5g03480.1 68418.m00304 expressed protein ; expression support... 29 3.9
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 29 3.9
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 29 3.9
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 29 3.9
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 28 5.1
At2g33440.1 68415.m04099 splicing factor family protein similar ... 28 5.1
At1g79880.3 68414.m09332 La domain-containing protein contains P... 28 5.1
At1g79880.2 68414.m09331 La domain-containing protein contains P... 28 5.1
At1g79880.1 68414.m09333 La domain-containing protein contains P... 28 5.1
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 28 5.1
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 28 5.1
At1g05510.1 68414.m00563 expressed protein 28 5.1
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 28 6.8
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 28 6.8
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l... 28 6.8
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 27 9.0
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 27 9.0
At3g08670.1 68416.m01007 expressed protein 27 9.0
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 27 9.0
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 327
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 327
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 65.3 bits (152), Expect = 4e-11
Identities = 28/59 (47%), Positives = 42/59 (71%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 330
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA A++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 64.1 bits (149), Expect = 8e-11
Identities = 27/59 (45%), Positives = 41/59 (69%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 330
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA ++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 139 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 309
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 310 ACSAMNGTEMLGATLKVEIS 369
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 139 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 309
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 310 ACSAMNGTEMLGATLKVEIS 369
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 139 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 309
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 310 ACSAMNGTEMLGATLKVEIS 369
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 58.0 bits (134), Expect = 6e-09
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 139 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 309
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 310 ACSAMNGTEMLGATLKVEIS 369
A +G + G L+VE++
Sbjct: 61 AIYGRDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 58.0 bits (134), Expect = 6e-09
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 139 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 309
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 310 ACSAMNGTEMLGATLKVEIS 369
A +G + G L+VE++
Sbjct: 61 AIYGRDGYDFDGHHLRVELA 80
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Frame = +1
Query: 139 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 309
MSS R +YVG L I+K ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 310 ACSAMNGTEMLGATLKVEIS 369
A +G + G L+VEI+
Sbjct: 61 AIYGRDGYDFDGCRLRVEIA 80
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 54.0 bits (124), Expect = 9e-08
Identities = 28/75 (37%), Positives = 46/75 (61%)
Frame = +1
Query: 148 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 327
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA ++
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDADDARYYLD 65
Query: 328 GTEMLGATLKVEISR 372
G + G+ + VE SR
Sbjct: 66 GRDFDGSRITVEASR 80
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGT 333
+YVG L I++ ++E F KYG++ + + + PP + F+EFE+ ++AEDA +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 334 EMLGATLKVEIS 369
+ G L+VE++
Sbjct: 69 NLDGCRLRVELA 80
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 54.0 bits (124), Expect = 9e-08
Identities = 28/75 (37%), Positives = 46/75 (61%)
Frame = +1
Query: 148 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 327
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA ++
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDADDARHYLD 65
Query: 328 GTEMLGATLKVEISR 372
G + G+ + VE SR
Sbjct: 66 GRDFDGSRITVEFSR 80
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 333
T ++VGGL + EDL++ F+++G++ SV + + G F++F N AE+A +NGT
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEALEKLNGT 362
Query: 334 EMLGATLKVEISR 372
+ T+++ R
Sbjct: 363 VIGKQTVRLSWGR 375
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/73 (32%), Positives = 43/73 (58%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 333
T ++VGGL + EDL++ F ++G++ SV + + G F++F N AE+A +NGT
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEALEKLNGT 364
Query: 334 EMLGATLKVEISR 372
+ T+++ R
Sbjct: 365 VIGKQTVRLSWGR 377
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACS 318
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 319 AMNGTEMLGATLKV 360
M+G E+ + V
Sbjct: 72 HMHGRELGNKVISV 85
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACS 318
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 319 AMNGTEMLGATLKV 360
M+G E+ + V
Sbjct: 72 HMHGRELGNKVISV 85
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/76 (32%), Positives = 44/76 (57%)
Frame = +1
Query: 145 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 324
S + ++VGGL + +EDL + F +G++ SV + + G F++F N Q AE+A +
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG-KGCGFVQFANRQSAEEAIGNL 382
Query: 325 NGTEMLGATLKVEISR 372
NGT + T+++ R
Sbjct: 383 NGTVIGKNTVRLSWGR 398
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 47.6 bits (108), Expect = 8e-06
Identities = 26/71 (36%), Positives = 42/71 (59%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 339
++VGG+ + K+DLE EF K+GK+ + L AFI++ + +A A +MNG M
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIED-FRFLRERKTAFIDYYEMDDALQA-KSMNGKPM 309
Query: 340 LGATLKVEISR 372
G+ L+V+ R
Sbjct: 310 GGSFLRVDFLR 320
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 339
++VG L + DL F +YG ++ + V + GFAFI + +++EA A A+ G +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQGANL 78
Query: 340 LG 345
G
Sbjct: 79 NG 80
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +1
Query: 193 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 345
KED++ E K+GKLN ++V N GF ++ FEN Q A A A++G G
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAG 538
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +1
Query: 142 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAED 309
S G R+YVG L + ++DL + F+ +G + V V + GF F++F L++A +
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 340
Query: 310 ACSAMNGTEMLGATLKV 360
A + E+ G +KV
Sbjct: 341 ALNLNGQLEIAGRAIKV 357
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 315
G + V G+ E ++ED+ F +G++ ++ + L+ G+A IE+E +EA+ A
Sbjct: 94 GWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAI 153
Query: 316 SAMNGTEMLGATLKVE 363
SAMNG E+L + V+
Sbjct: 154 SAMNGAELLTQNVSVD 169
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 145 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDA 312
S G +Y+ L + + E L+ F +YG + S V LNP GF F+ + N +EA A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 313 CSAMNGTEMLG 345
S MNG +M+G
Sbjct: 389 LSEMNG-KMIG 398
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 321
T VYV L + I +++L + F K+G ++S V + G F F+ FE + A A
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 322 MNGTEMLGATLKVEISRK 375
MNG + L V ++K
Sbjct: 289 MNGISLGDDVLYVGRAQK 306
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 136 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEA 303
T SG +++ L I + L F +G + S VA++ G+ F++FE + A
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
Query: 304 EDACSAMNGTEM 339
+ A +NG M
Sbjct: 190 QAAIDKLNGMLM 201
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 265 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 375
G+A+I F N +A A A+N T + +++ +S +
Sbjct: 90 GYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNR 126
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/76 (30%), Positives = 44/76 (57%)
Frame = +1
Query: 145 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 324
S ++VGG+ + EDL + F ++G++ SV + + G F++F + + AEDA ++
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESL 376
Query: 325 NGTEMLGATLKVEISR 372
NGT + T+++ R
Sbjct: 377 NGTVIGKNTVRLSWGR 392
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 321
T VYV L E +DL+ F +YGK+ S V + GF F+ FEN +A A +
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Query: 322 MNG 330
+NG
Sbjct: 89 LNG 91
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 330
GT V V L + DLE F YG++ + N F+EF +++ A+ A A+N
Sbjct: 222 GTLV-VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNR 280
Query: 331 TEMLGATLKVEISR 372
TE+ G +K+E SR
Sbjct: 281 TEIAGKRIKLEHSR 294
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 321
R ++GGL L F+KYG L V L+ GF FI F+ + ++A +A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 322 MNGTEMLGATLKVE 363
MNG ++ G T+ V+
Sbjct: 68 MNGMDLDGRTITVD 81
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +1
Query: 181 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 360
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 361 EISRK 375
E + K
Sbjct: 163 EYAVK 167
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE- 336
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 337 -MLGATLKVE 363
G L+VE
Sbjct: 61 GRTGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +1
Query: 181 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 360
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 361 EISRK 375
E + K
Sbjct: 163 EYAVK 167
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE- 336
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 337 -MLGATLKVE 363
G L+VE
Sbjct: 61 GRTGRRLRVE 70
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 312
V+VG ++ DLER FDKYG+++ V + G+AF+ FE+ ++AEDA
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM---KSGYAFVYFEDERDAEDA 51
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 37/62 (59%)
Frame = +1
Query: 190 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 369
K+ D+E+ F+ YGK+ +V + N F+F++FE ++A A A +++L + VE +
Sbjct: 106 KEHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVEYA 162
Query: 370 RK 375
K
Sbjct: 163 LK 164
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 315
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130
Query: 316 SAMNGTEMLG 345
+N + + G
Sbjct: 131 KYLNQSVLEG 140
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 315
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129
Query: 316 SAMNGTEMLG 345
+N + + G
Sbjct: 130 KYLNQSVLEG 139
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 142 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 306
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 245 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 307 DACSAMNGTEMLGATLKV 360
A +++NG ++ G ++V
Sbjct: 305 KAINSLNGADLDGRQIRV 322
Score = 30.7 bits (66), Expect = 0.96
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 321
+++VG L + L + F+ G + V V + GF F+ E E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 322 MNGTEMLGATLKV 360
NG E G L+V
Sbjct: 160 FNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 142 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 306
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 307 DACSAMNGTEMLGATLKV 360
A +++NG ++ G ++V
Sbjct: 313 KAINSLNGADLDGRQIRV 330
Score = 30.7 bits (66), Expect = 0.96
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 321
+++VG L + L + F+ G + V V + GF F+ E E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 322 MNGTEMLGATLKV 360
NG E G L+V
Sbjct: 160 FNGYEFEGRPLRV 172
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +1
Query: 136 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEA 303
TM G + VYVGGL I +E + R F YG + +V + ++ + F+ F N + A
Sbjct: 2 TMDDGNS-VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 304 EDACSAMNGTEMLGATLKV 360
+DA M+G + G ++V
Sbjct: 61 DDAIEDMDGKSIGGRAVRV 79
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = +1
Query: 181 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 360
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 66 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 122
Query: 361 EISRK 375
E + K
Sbjct: 123 EYAVK 127
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = +1
Query: 181 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 360
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 107 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 163
Query: 361 EISRK 375
E + K
Sbjct: 164 EYAVK 168
Score = 41.5 bits (93), Expect = 5e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 339
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEF 60
Query: 340 --LGATLKVE 363
G L+VE
Sbjct: 61 GRKGRRLRVE 70
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 321
+VYVG L + + KE LE F + GK+ S V+ P GF F+ F + ++ E A A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 322 MNGTEMLGATLKV 360
+N + + G ++V
Sbjct: 238 LNNSLLEGQKIRV 250
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +1
Query: 142 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAE 306
S RVY+G + + E L + +++G + V V + F F +++++A
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 307 DACSAMNGTEMLGATLKVEISRK 375
+NG + G +KV I+ K
Sbjct: 132 AVVEKLNGNTVEGREIKVNITEK 154
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1
Query: 142 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 306
+ G RVYVG L G+ LE F + GK+ V + GF F+ +++ QE +
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 307 DACSAMNGTEMLGATLKV 360
+A +++G ++ G ++V
Sbjct: 260 NAIKSLDGADLDGRQIRV 277
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 145 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAED 309
S +++VG L + L + F+ G + V V + GF F+ ++ E E
Sbjct: 88 SADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEA 147
Query: 310 ACSAMNGTEMLGATLKV 360
A NG E+ G L+V
Sbjct: 148 AAQQFNGYELDGRPLRV 164
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Frame = +1
Query: 142 SSGG-TRVYVGGLVEGIKKEDLEREFDKYGKL---NSVW--VALNPPGFAFIEFENLQEA 303
SSG T++YV GL ++ L F+++G L N V VA P GFAF+ +E +EA
Sbjct: 72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131
Query: 304 EDACSAMNGTEMLGATLKVE 363
A M+G + G + VE
Sbjct: 132 MKAIQGMHGKFLDGRVIFVE 151
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 315
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 316 SAMNGTEMLGATLKVEISRK 375
+++ + + G + VE +R+
Sbjct: 134 RSLDHSVLQGRVITVEKARR 153
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/73 (27%), Positives = 42/73 (57%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 333
T ++VG + + + ++DL+ F ++G+L V + F+++ N AE A S +NGT
Sbjct: 278 TTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG-KRCGFVQYANRACAEQALSVLNGT 336
Query: 334 EMLGATLKVEISR 372
++ G ++++ R
Sbjct: 337 QLGGQSIRLSWGR 349
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 321
T VYV L E ++L+ F +YG ++S V + G F F+ FEN ++A A A
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEA 284
Query: 322 MNG 330
+NG
Sbjct: 285 LNG 287
Score = 34.7 bits (76), Expect = 0.059
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACS 318
G +YV L + + E L F ++G + S V +P G + F+ F EA +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386
Query: 319 AMNGTEMLGATLKVEISRK 375
MNG + G L V ++++
Sbjct: 387 EMNGKMVGGKPLYVALAQR 405
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +1
Query: 142 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPGFAFIEF--ENLQEAEDA 312
S GG R++VGGL E + ++DL + F G +++V +V FA+I+F +
Sbjct: 6 SGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKL 65
Query: 313 CSAMNGTEMLGATLKVEISRK 375
S NG G L++E +++
Sbjct: 66 FSTYNGCVWKGGRLRLEKAKE 86
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 139 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 303
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 304 EDACSAMNGTEMLGATLKV 360
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 139 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 303
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 304 EDACSAMNGTEMLGATLKV 360
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 139 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 303
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 304 EDACSAMNGTEMLGATLKV 360
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 318
+++++GG+ + ++ L F KYG++ V L+ GF F+ F + + A A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 319 AMNGTEMLGATLKV 360
A++G ++ G +KV
Sbjct: 100 ALDGRDLHGRVVKV 113
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +1
Query: 139 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEA 303
+ + T +Y+G + G + ++E F ++G + V VA N F FI+FE+ + A
Sbjct: 55 LQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVA 114
Query: 304 EDACSAMNGTEMLGATLKVEI 366
E A AMN ++ LKV +
Sbjct: 115 EIAAGAMNDYLLMEHMLKVHV 135
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 321
R+YVG L + LER F ++GK+ V + GF F++ N E A +A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 322 MNGTEMLGATLKVEISRK 375
++G + G +KV ++ +
Sbjct: 268 LDGQNLEGRAIKVNVAEE 285
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 321
+++VG L + + L F++ G + V N GF F+ ++EAE A
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 322 MNGTEMLGATLKV 360
N E+ G L V
Sbjct: 174 FNSFEVNGRRLTV 186
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 321
++YVG L + + L + F+ +G + V + L+P GF FI+F L+ ++ A A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 322 MNG-TEMLGATLKV 360
+NG E+ G T+KV
Sbjct: 326 LNGKLEIAGRTIKV 339
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 193 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 327
++D+ E KYG +N ++V N GF ++ F++++ A A AM+
Sbjct: 458 RDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMH 502
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/73 (31%), Positives = 39/73 (53%)
Frame = +1
Query: 142 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 321
SS G ++V L I E+L F YG++ V ++ +IEF ++++A+ A
Sbjct: 292 SSEGA-LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQG 350
Query: 322 MNGTEMLGATLKV 360
+NG E+ G LK+
Sbjct: 351 LNGLEVAGRQLKL 363
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 324
++V + G K+ L R F+K+G++ ++ +P G A+IEF + AE+A S +
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS-L 576
Query: 325 NGTEMLGATLKV 360
+GT + LK+
Sbjct: 577 DGTSFMSRILKI 588
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Frame = +1
Query: 142 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAE 306
+S +++++GGL + ++ L+ F +G++ V +A + GF F++F +A
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 307 DACSAMNGTEMLGATLKVEIS 369
A AM+G +LG L++ +
Sbjct: 97 SAKDAMDGKGLLGRPLRISFA 117
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 327
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A +N
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 328 GTEMLGATLKVEISR 372
+E+ G LKV R
Sbjct: 150 ESELHGRQLKVSPKR 164
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 327
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A +N
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 328 GTEMLGATLKVEISR 372
+E+ G LKV R
Sbjct: 150 ESELHGRQLKVSPKR 164
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 333
VYVG + DLER F K+G++ V + G+AF+ FE+ ++AEDA + T
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFVYFEDERDAEDAIRRTDNT 58
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = +1
Query: 190 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 363
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE
Sbjct: 108 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 162
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +1
Query: 187 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 366
+ ++L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 281 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340
Query: 367 SR 372
SR
Sbjct: 341 SR 342
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +1
Query: 187 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 366
+ ++L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 294 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
Query: 367 SR 372
SR
Sbjct: 354 SR 355
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACS 318
G+ +Y+ L + + E L+ F +YG + S V +N G F F+ + N +EA A
Sbjct: 327 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMK 386
Query: 319 AMNGTEMLG 345
MNG +M+G
Sbjct: 387 EMNG-KMIG 394
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 321
T VYV L + I ++L++ F KYG ++S V + G F F+ F + + A A
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 284
Query: 322 MNGTEM 339
MNG +
Sbjct: 285 MNGISL 290
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +1
Query: 136 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEA 303
T SG V++ L I + L F +G + S VA++ G+ F++FE + A
Sbjct: 126 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
Query: 304 EDACSAMNG 330
+ A +NG
Sbjct: 186 QAAIDKLNG 194
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 321
T VYV L E + E+L + F ++G S + + GF F+ FEN +A A A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 322 MNG 330
+NG
Sbjct: 284 LNG 286
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +1
Query: 145 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDA 312
S G+ +YV L E + + L F +G + S V +P G + F+ F +EA A
Sbjct: 324 SQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRA 383
Query: 313 CSAMNGTEMLGATLKVEISRK 375
+ MNG ++ L V ++++
Sbjct: 384 ITEMNGKMIVTKPLYVALAQR 404
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 321
T VYV LVE DL+R F ++G++ S V + G F F+ FE + A A
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 322 MNG 330
MNG
Sbjct: 179 MNG 181
Score = 36.3 bits (80), Expect = 0.019
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACS 318
G +YV L + + LE F ++G + S V ++ G + F+EF +EA A
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAML 281
Query: 319 AMNGTEMLG 345
MNG +M+G
Sbjct: 282 KMNG-KMVG 289
Score = 31.9 bits (69), Expect = 0.42
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +1
Query: 145 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDA 312
SG V+V L E I + L F +GK+ S VA + G + F++F + A
Sbjct: 28 SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 87
Query: 313 CSAMNGT 333
C+ NGT
Sbjct: 88 CNFHNGT 94
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 333
T V+VGGL + + L+ F +YG++ V + F++F AE+A +NG
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGV 319
Query: 334 EMLGATLKVEISR 372
++ G T+++ R
Sbjct: 320 QLGGTTVRLSWGR 332
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 315
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103
Query: 316 SAMNGTEMLGATLKVE 363
+++ + + G + VE
Sbjct: 104 RSLDHSVLQGRVITVE 119
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 321
RVYVG L + LE+ F ++GK+ V + GF F+ ++ E +A SA
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 322 MNGTEMLGATLKVEISRK 375
++G + G ++V ++ +
Sbjct: 305 LDGQNLEGRAIRVNVAEE 322
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 321
+++VG L + + L F++ G + V N GF F+ ++ EAE A
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 322 MNGTEMLGATLKV 360
N ++ G L V
Sbjct: 211 FNRYDLNGRLLTV 223
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 318
T + V L ++EDL R F+++G + +++ + P GF FI+F + +A +A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 319 AMNGTEMLGATLKV 360
M+G +LG L V
Sbjct: 97 QMDGYLLLGRELTV 110
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 318
T + V L ++EDL + F+++G + +++ + P GF F++F + +A DA
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 319 AMNGTEMLGATLKV 360
M+G +LG L V
Sbjct: 96 HMDGYLLLGRELTV 109
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAM 324
VYVGG+ + + DL F +YG++ V + + GFAF+ +E+ + A +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 325 NGTEMLGATLKVE 363
NG +LG T+KV+
Sbjct: 98 NGALVLGRTIKVD 110
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDAC 315
G+R++VGGL + DLER F ++G + + L GF FI F + + +++
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 316 SAMNGTE 336
M+G +
Sbjct: 66 REMHGRD 72
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 318
TRVYVG L + L F YG + V + GF F+ + + EAE A S
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 319 AMNGTEMLGATLKVEI 366
M+G E+ G + V++
Sbjct: 63 GMDGKELNGRRVSVKL 78
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSA 321
T +Y+ L + ++ L +F ++GK+ S+ +A + G+AF+ F+N ++A A
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 322 MNGTEMLGATLKVEISRK 375
+NGT+ L V ++K
Sbjct: 261 VNGTKFGSKCLYVGRAQK 278
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 330
GT V V L I +DL F +G++ + + F+EF +++ AE A A+N
Sbjct: 253 GTLV-VFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 331 TEMLGATLKVEISR 372
E+ G +KVE SR
Sbjct: 312 CEIAGKRIKVEPSR 325
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/70 (17%), Positives = 32/70 (45%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 339
++V + ++ +L F++YG + +++ GF I + +++ A A ++ +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 340 LGATLKVEIS 369
L + S
Sbjct: 230 RRRKLDIHFS 239
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 330
GT V V L I +DL F +G++ + + F+EF +++ AE A A+N
Sbjct: 253 GTLV-VFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 331 TEMLGATLKVEISR 372
E+ G +KVE SR
Sbjct: 312 CEIAGKRIKVEPSR 325
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/70 (17%), Positives = 32/70 (45%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 339
++V + ++ +L F++YG + +++ GF I + +++ A A ++ +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 340 LGATLKVEIS 369
L + S
Sbjct: 230 RRRKLDIHFS 239
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +1
Query: 136 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 300
T G +++ + + ++L F +GK+ S V ++ F FI +++
Sbjct: 333 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 392
Query: 301 AEDACSAMNGTEMLGATLKVEISR 372
A++A + MNG ++ G LKV++ R
Sbjct: 393 AQNAINTMNGCQLSGKKLKVQLKR 416
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 324
+++VG L + + + +++ F +YG + + + G F+++E+ ++A A A+
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 325 NGTEML 342
NG ++
Sbjct: 170 NGRHIM 175
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +1
Query: 136 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 300
T G +++ + + ++L F +GK+ S V ++ F FI +++
Sbjct: 324 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 383
Query: 301 AEDACSAMNGTEMLGATLKVEISR 372
A++A + MNG ++ G LKV++ R
Sbjct: 384 AQNAINTMNGCQLSGKKLKVQLKR 407
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 324
+++VG L + + + +++ F +YG + + + G F+++E+ ++A A A+
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 325 NGTEML 342
NG ++
Sbjct: 161 NGRHIM 166
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 327
+YVG + E++++ F G +N V + + P GFA++EF ++ +++ +N
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL-ILN 163
Query: 328 GTEMLGATLKVEISR 372
+E+ G +KV R
Sbjct: 164 ESELHGRQIKVSAKR 178
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = +1
Query: 190 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 363
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE
Sbjct: 82 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 136
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 318
++++VGGL E L+ F +GK+ V L+ GF F+ +++++ A +A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 319 AMNGTEMLGATLKV 360
AM E+ G + V
Sbjct: 96 AMQNKELDGRIIGV 109
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 318
+++++GGL ++ L F K G++ + ++ GF F+ F + EA+ A
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 319 AMNGTEMLGATLKVEISR 372
NG ++ G T+ V+ ++
Sbjct: 94 EFNGQQLNGRTIFVDYAK 111
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +1
Query: 139 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 303
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 304 EDACSAMNGT 333
DA MNG+
Sbjct: 61 RDAIEEMNGS 70
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 148 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 312
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 313 CSAMNGTEMLGATLKV 360
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 148 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 312
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 313 CSAMNGTEMLGATLKV 360
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 148 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 312
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 313 CSAMNGTEMLGATLKV 360
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 318
++++VGGL G L++ F +G++ V + GF F+ F A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 319 AMNGTEMLGATLKVEIS 369
M+G E+ G ++V ++
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 318
++++VGGL G L++ F +G++ V + GF F+ F A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 319 AMNGTEMLGATLKVEIS 369
M+G E+ G ++V ++
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDAC 315
G+ V++GGL + +EDL ++ G++ V + + + G+AF+ F+ A+ A
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 316 SAMNGTEMLGATLKVEIS 369
++ E G T++ +S
Sbjct: 175 EELHSKEFKGKTIRCSLS 192
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 37.1 bits (82), Expect = 0.011
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 145 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDAC 315
+G +YV L I LER F +G + S V GF F++F+ Q A A
Sbjct: 109 TGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 316 SAMNGTEMLGATLKV 360
SA++G+ + G L V
Sbjct: 169 SALHGSMVYGKKLFV 183
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 321
T VYV L+E + + L F +YG ++SV V + GF F+ F N + A+ A +
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES 261
Query: 322 MNGTEM 339
+ G ++
Sbjct: 262 LCGLQL 267
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSA 321
+ +YV L E + + L F YG++ S V + GF F+ F N +E++ A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 322 MNGTEMLGATLKVEISRK 375
+NG + G + V ++ +
Sbjct: 364 LNGFLVDGKPIVVRVAER 381
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 315
T+V+VGGL + E L R FD+YG + V + G+ F+ F + + A AC
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 318
T++YVGGL +KE L F ++G++ V V + G+ F+ F++ + A AC
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 319 AMNGT 333
N T
Sbjct: 73 DPNPT 77
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +1
Query: 190 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATL 354
+ E+L F+++G + V++ + P GFAF+EF + +A +A +MN G +
Sbjct: 59 RPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREI 118
Query: 355 KVEIS 369
V ++
Sbjct: 119 TVVVA 123
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAM 324
++VG L +G +EDL++ F G++ V + NP G AF+ F +++A+ A +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 325 NGTEMLGATLKVEISR 372
+ G V S+
Sbjct: 276 KSPMINGKKCGVTASQ 291
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 327
V+VG + E++++ F G ++ V + + P GFA++EF ++ ++A +N
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 328 GTEMLGATLKV 360
+E+ G LKV
Sbjct: 153 ESELHGRQLKV 163
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 35.9 bits (79), Expect = 0.026
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 333
T V GL + L + F + +L P GF FI FE+ +A+ A A+NG
Sbjct: 71 TCVSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130
Query: 334 EMLGATLKVEISRK 375
+ G + VE +++
Sbjct: 131 IVNGRLIFVETAKE 144
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.026
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 321
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 322 MNGTEMLGATLKVE 363
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.026
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 321
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 322 MNGTEMLGATLKVE 363
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 35.9 bits (79), Expect = 0.026
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 321
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 322 MNGTEMLGATLKVE 363
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 35.9 bits (79), Expect = 0.026
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREF-DKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSA 321
+VY G L + + L+ F D+ G L + + GF FI FE+ + + A +
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 322 MNGTEMLGATLKVEIS 369
MNG E+ G L++ ++
Sbjct: 280 MNGVEVEGRALRLNLA 295
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 321
R +VGGL ++ +ER F+++G++ + ++ GF F+ F++ A
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 322 MNGTEMLGATLKVE 363
MNG E+ G + +
Sbjct: 105 MNGQELDGRNITAQ 118
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.9 bits (79), Expect = 0.026
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAM 324
+YVGGL + + + L F +G + V L+ F F+ F ++A A M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 325 NGTEMLGATLKV 360
+G E+ G L V
Sbjct: 75 DGAELYGRVLTV 86
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 35.5 bits (78), Expect = 0.034
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 318
T VY+G + +E L F + G++ + + L+ P GF F+ F + ++ EDA
Sbjct: 34 TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVK 93
Query: 319 AMNGTEMLGATLKVE 363
++GT + ++V+
Sbjct: 94 YISGTILDDRPIRVD 108
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 35.5 bits (78), Expect = 0.034
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 324
+++G L + + L F + G+L SV V N P G+ FIEF + AE
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 325 NGTEMLGATLKVEIS 369
NGT+M G L ++
Sbjct: 86 NGTQMPGTELTFRLN 100
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 35.5 bits (78), Expect = 0.034
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +1
Query: 139 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 297
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 298 EAEDACSAMNGTEMLGATLKV 360
+DA MNG ++ G ++ V
Sbjct: 61 AMKDAIEGMNGQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 35.5 bits (78), Expect = 0.034
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +1
Query: 139 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 297
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 298 EAEDACSAMNGTEMLGATLKV 360
+DA MNG ++ G ++ V
Sbjct: 61 AMKDAIEGMNGQDLDGRSITV 81
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 35.5 bits (78), Expect = 0.034
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDACS 318
T+V+VGGL + E L + F++YG+ L +V +A G+ F+ F + + A AC+
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.1 bits (77), Expect = 0.045
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 324
V V L E ++ DL F +G + V+VA++ GF F+ F + ++A+ A + +
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 325 NGTEMLGATLKVE 363
NG L+VE
Sbjct: 275 NGYGYDNLILRVE 287
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 35.1 bits (77), Expect = 0.045
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Frame = +1
Query: 145 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAED 309
S + ++V G+ +E L + F +YG++ V V ++ P GFA++ F + +EAE
Sbjct: 18 SFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEK 77
Query: 310 ACSAMNGTEMLGATLKVEISR 372
A +N + G + ++ ++
Sbjct: 78 ALLELNAQLVDGRVVILDTTK 98
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 318
++++VGG+ + L F KYG++ + ++ GFAF+ F + +EA +A
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 319 AMNGTEMLGATLKV 360
++G ++ G ++V
Sbjct: 94 -LDGQDLHGRRIRV 106
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 35.1 bits (77), Expect = 0.045
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 318
T++Y G L + L + + V V N GFAF+ N+++
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 319 AMNGTEMLGATLKVEISRK 375
++GTE LG LKV + K
Sbjct: 145 NLDGTEYLGRALKVNFADK 163
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 34.7 bits (76), Expect = 0.059
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +1
Query: 142 SSGGTR---VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQ 297
+ GG R ++VGGL I + + + FD++G + V V + P GF FI F++ +
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-E 173
Query: 298 EAEDACSAMNGTEMLGATLKVE 363
E+ D E+ G ++V+
Sbjct: 174 ESVDMVLHKTFHELNGKMVEVK 195
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 34.7 bits (76), Expect = 0.059
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 324
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 325 NGT-EMLGATLKVEI 366
NG +M G+T+ + +
Sbjct: 167 NGKHKMEGSTVPLVV 181
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 34.7 bits (76), Expect = 0.059
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 324
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 325 NGT-EMLGATLKVEI 366
NG +M G+T+ + +
Sbjct: 167 NGKHKMEGSTVPLVV 181
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDAC 315
G +++ + ++L F +G + S V ++ F F+ +++ A++A
Sbjct: 348 GANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI 407
Query: 316 SAMNGTEMLGATLKVEISR 372
MNG + G LKV++ R
Sbjct: 408 DMMNGRHLGGKKLKVQLKR 426
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 34.7 bits (76), Expect = 0.059
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 324
++V L + ++REF+ YG + V + + P G+AFIE+ + ++ + A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 325 NGTEMLGATLKVEISR 372
+G ++ G + V++ R
Sbjct: 200 DGQKIDGRRVLVDVER 215
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 34.7 bits (76), Expect = 0.059
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +1
Query: 148 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 312
G R++VGGL + + + +G L + N G+AF +++ + A
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
Query: 313 CSAMNGTEMLGATLKV 360
C+A+NG +M TL V
Sbjct: 433 CAALNGIKMGDKTLTV 448
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 34.3 bits (75), Expect = 0.078
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 318
GT++Y+ L G+ ED++ F + G L + + G A + F +A A
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
Query: 319 AMNGTEMLGATLKVEI 366
N ++ G +K+EI
Sbjct: 167 RYNNVQLDGKLMKIEI 182
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +1
Query: 166 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 345
V L I ++L R YG++ + ++ +IEF +++ A A +NG E+ G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365
Query: 346 ATLKV 360
L++
Sbjct: 366 KKLQL 370
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSA 321
T+++V + K +L + F +G++ S+ + G+AF+EF QEA +A A
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKA 728
Query: 322 MNGTEMLGATLKVE 363
+ T G L +E
Sbjct: 729 LASTHFYGRHLVLE 742
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 268 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 375
F FI F + QEA+ A N T + + + VEI+ K
Sbjct: 11 FGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHK 46
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +1
Query: 196 EDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 363
ED+ F+KYG + + ++++ G FIE + +EA A ++ E G LKV+
Sbjct: 108 EDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVD 167
Query: 364 ISR 372
++
Sbjct: 168 YAK 170
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +1
Query: 166 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 345
V L + E L + F G + + + A+IE+ N +EA A A+N TE+ G
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSIT-DSKHIAYIEYSNSEEAT-AALALNNTEVFG 412
Query: 346 ATLKVEISR 372
L VEI++
Sbjct: 413 RALNVEIAK 421
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 265 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 369
G+ F+ F +EAE+A + +NG E++G + ++ S
Sbjct: 237 GYGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 339
+YVGGL I ++D+ +F +G++ S+ + L AF+ + + + AE A ++ +
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRI-LADKACAFVTYTSREGAEKAAQELSNRLV 288
Query: 340 L-GATLKVEISR 372
+ G LK+ R
Sbjct: 289 INGQRLKLTWGR 300
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 318
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 144
Query: 319 AMNGTEMLGATLKVEI 366
N ++ G +K+EI
Sbjct: 145 KYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 318
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 80
Query: 319 AMNGTEMLGATLKVEI 366
N ++ G +K+EI
Sbjct: 81 KYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 318
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 319 AMNGTEMLGATLKVEI 366
N ++ G +K+EI
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALN-PPGFAFIEFENLQEAEDACSA 321
+++VGGL + E+ + F+ YG + V + A N P GF F+ F++ ++A D+
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLH 169
Query: 322 MNGTEMLGATLKVE 363
++ G ++V+
Sbjct: 170 KTFHDLSGKQVEVK 183
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 318
T++++GGL G L F +G + V ++ GF F+ F + A A S
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 319 AMNGTEMLGATLKV 360
M+G E+ G ++V
Sbjct: 95 EMDGKELNGRHIRV 108
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 318
T++++GGL G L F +G + V ++ GF F+ F + A A S
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 319 AMNGTEMLGATLKV 360
M+G E+ G ++V
Sbjct: 95 EMDGKELNGRHIRV 108
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAM 324
++YV L + K ++ F +YG + +++AL+ G+AF++F + A A A+
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 325 NG 330
NG
Sbjct: 268 NG 269
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 32.3 bits (70), Expect = 0.32
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 318
GTR++V L +G+ ED+ F + G++ + + P G A + + +A A
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALK 151
Query: 319 AMNGTEMLGATLKVEI 366
N + G +++EI
Sbjct: 152 KYNNVLLDGRPMRLEI 167
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 193 KEDLEREFDKYGKLNSVWVALN-PPGFAFIEFENLQEAEDACSAMNG 330
+ED++ E K+G +SV V + P G + F++ ++A+ AMNG
Sbjct: 430 EEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNG 476
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACS 318
TR++V + + + D F++YG++ +++ + G FI F + ED
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVED--- 147
Query: 319 AMNGTEMLGAT 351
M T LG T
Sbjct: 148 LMEDTHDLGGT 158
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEF 285
G +++VG L + +DL F ++G + ++ +P GF F+ F
Sbjct: 239 GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF 288
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDAC 315
T+V+VGGL KE + F KYG L +V ++ G+ F+ F++ + A AC
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM-NGTE 336
+YVGGL + ++D+ +F +G++ S+ + L AF+ + + AE A + N
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRI-LAEKACAFVTYTTREGAEKAAEELSNRLV 288
Query: 337 MLGATLKVEISR 372
+ G LK+ R
Sbjct: 289 VNGQRLKLTWGR 300
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 324
+++ L + KE++++ F +G++ S+ + L+ P G AF++F+ + A SA
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 325 NGTEMLGATLK 357
+ +G LK
Sbjct: 623 DTASGVGVLLK 633
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 324
V V GL I LE F + G + ++ N GFAF++F ++ A
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 325 NGTEMLGATLKVE 363
NG+ + G + V+
Sbjct: 82 NGSTVGGRRITVK 94
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 318
GT VY+ L +G+ ED+ + + G+L + + P G A + + +A A
Sbjct: 106 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMR 165
Query: 319 AMNGTEMLGATLKVEI 366
N + G +K+EI
Sbjct: 166 KYNNVLLDGRPMKLEI 181
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 318
T++YV GL + E L F+++G++ V + GF F+ F ++ A AC
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 319 AMNGT 333
N T
Sbjct: 69 NPNHT 73
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN--PPGFAFIEFENLQEAEDACSAMNG 330
+YV L I E++ F KYG + + + + G AF+ +E++ +A++A ++G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFEN 291
+++VGG+ + +E L++ F +YG + VA P GF F+ F N
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAN 56
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 324
++V L + + L+ F +G++ V +A++ P G ++EF+ +AE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 325 NGTEMLGATLK 357
+G ++ G +K
Sbjct: 160 DGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 324
++V L + + L+ F +G++ V +A++ P G ++EF+ +AE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 325 NGTEMLGATLK 357
+G ++ G +K
Sbjct: 160 DGAQIDGKVVK 170
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 31.5 bits (68), Expect = 0.55
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP--GFAFIEFENLQEAEDACSAM 324
G + V L +GI + + R F +YG ++V AF++F+N A A +
Sbjct: 27 GVTLLVRHLPDGIPHDIVSRLFSQYGA-SAVRPCSGGKLRNAAFVDFKNEAFASQAHRQL 85
Query: 325 NGTEMLGATLKVEISRK 375
NG LG L+V+ + K
Sbjct: 86 NGLRFLGKVLQVQRANK 102
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 31.5 bits (68), Expect = 0.55
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 318
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 319 AMNGTEMLGATLKVEISR 372
M ++++ ++
Sbjct: 71 QMQNFPFYDKPMRIQYAK 88
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 31.5 bits (68), Expect = 0.55
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 318
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 319 AMNGTEMLGATLKVEISR 372
M ++++ ++
Sbjct: 71 QMQNFPFYDKPMRIQYAK 88
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 31.1 bits (67), Expect = 0.73
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACSA 321
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 318
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 31.1 bits (67), Expect = 0.73
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACSA 321
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 377
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 268 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 372
+AF+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 39
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 321
++++ GL ++ L F+ +G+L V + ++ G+AF+E+ + A A
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 322 MNGTEMLGATLKVEISR 372
MNG + G + V++++
Sbjct: 343 MNGKIINGWMIVVDVAK 359
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 268 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 372
+AF+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 39
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 318
T ++V GL + E L F ++G++ V + GF F+ + L+++ +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 319 AMNGTEMLGATLKVEISR 372
M+G + G + E +R
Sbjct: 116 GMDGKFLDGWVIFAEYAR 133
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 30.7 bits (66), Expect = 0.96
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 330
VYV + + + +E+L F G++ V +P FAFIEF N +E A +M+G
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTN-EEGARAALSMSG 229
Query: 331 TEMLGATLKV 360
T + LKV
Sbjct: 230 TVLGFYPLKV 239
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 202 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 372
L + F YG + + F+EF ++++A A MNG E+ G + +E SR
Sbjct: 229 LRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFSR 285
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 291
+++VGGL + ++ F+ YG ++ + ++ P GF F+ F++
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS 160
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 30.7 bits (66), Expect = 0.96
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 318
+Y+ L E IKKE+L+R F ++G++ V VAL P G A++ F + A A
Sbjct: 12 IYIQNLNERIKKEELKRSLYCLFSQFGRILDV-VALKTPKLRGQAWVTFSEVTAAGHAVR 70
Query: 319 AMNGTEMLGATLKVEISR 372
M ++++ ++
Sbjct: 71 QMQNFPFYDKPMRLQYAK 88
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.7 bits (66), Expect = 0.96
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSA 321
+VYVG L + + L F K+G + S V + FAF+ F + +E DA +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 271
Query: 322 MNGTEMLGATLKV 360
NGT+ G + V
Sbjct: 272 FNGTQYEGRRIIV 284
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 324
V V L E + DL F +G + VA++ GF F+ F + ++A+ A + +
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235
Query: 325 NGTEMLGATLKVEIS 369
NG L+VE S
Sbjct: 236 NGYGYDNLILRVEWS 250
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Frame = +1
Query: 187 IKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEAED 309
+K+ED+E F +YGK+NSV + + G A +EF ++A++
Sbjct: 127 VKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQN 173
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +1
Query: 142 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAE 306
+S ++VG L + L + F + + V + GF F+ F N Q+A+
Sbjct: 140 TSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 199
Query: 307 DACSAMNG 330
A + MNG
Sbjct: 200 TAINEMNG 207
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 321
T +Y+ L + +E L F +GK+ +A + GFAFIEFE+ A A
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 322 MNG 330
M+G
Sbjct: 77 MDG 79
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 223 YGKLNSVWVALNPPGFAFIEFENLQE 300
+G +N +W LNPPG A I EN+ E
Sbjct: 405 FGAMN-MWFLLNPPGKATIHVENVDE 429
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 321
+++VGG+ + +++L+ F KYG + V + GF F+ F++ + ++ S
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 322 MNGTEMLGATLKVEISR 372
N +M A +VEI +
Sbjct: 170 GNMIDM--ADTQVEIKK 184
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 324
VYVGGL + +E L F + G + +V+V + + FIE+ + ++A+ A +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 325 NGTEMLGATLKV 360
N ++ G ++V
Sbjct: 87 NMIKLHGKPIRV 98
>At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,
putative similar to SP|P07374 Urease (EC 3.5.1.5) (Urea
amidohydrolase) {Canavalia ensiformis}; contains Pfam
profile PF01979: Amidohydrolase family
Length = 838
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 377 GTGPAEVGSEVGAAVTSGVVV--HSEVREEAGSTTHTVAAAAGRTIVT 514
GT PA + + + A + V H++ E+G HT+ A GRTI T
Sbjct: 494 GTTPAAIDNCLAVAEEYDIQVNIHTDTLNESGFVEHTINAFRGRTIHT 541
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 318
T+V+VGGL +++ R FD++G++ + + G+ F+ F + A A +
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Query: 319 AMN 327
N
Sbjct: 77 DPN 79
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 330
VYV + + + +E L F G++ + +P FAF+EF + Q A +A S + G
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALS-LGG 201
Query: 331 TEMLG 345
T MLG
Sbjct: 202 T-MLG 205
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 187 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 366
+ L F YG++ V F+EF ++++A A MNG + G + ++
Sbjct: 194 VSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQF 253
Query: 367 SR 372
SR
Sbjct: 254 SR 255
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 265 GFAFIEFENLQEAEDACSAMNG 330
GF F+ F N Q+A+ A + MNG
Sbjct: 194 GFGFVSFRNQQDAQTAINEMNG 215
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 265 GFAFIEFENLQEAEDACSAMNG 330
GF F+ F N Q+A+ A + MNG
Sbjct: 190 GFGFVSFRNQQDAQTAINEMNG 211
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +1
Query: 181 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 360
+ I ++ L F YG + + + N P A ++ + +AE A + G + G L+V
Sbjct: 255 DSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEV 314
Query: 361 EISR 372
S+
Sbjct: 315 NFSK 318
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 261
V+VG L +KK+ + +EF K+G++ SV + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 259 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 372
P GF FI F++ +A A +++G + G + VE+++
Sbjct: 47 PKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAK 84
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 202 LEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 366
LE+ FD G++ V+V + AF+ E + AED ++GT+++G T+ V+
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEG-EGAEDKALQLSGTDVVGWTVIVKP 191
Query: 367 S 369
S
Sbjct: 192 S 192
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 181 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 321
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 181 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 321
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYG--KLNSVWVA-----LNPPGFAFIEFENLQEAED 309
GT ++V L L F +G K N + V NP F FI FE + +
Sbjct: 279 GTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFETVASVQS 338
Query: 310 ACSAMNGTEMLGATLKVEISRK 375
A T + A K+ + K
Sbjct: 339 VLQAAKNTPFMLADRKLRVKEK 360
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +1
Query: 229 KLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEM 339
K N +W+ ++P G+ FIEF QEA++A +G ++
Sbjct: 89 KENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 130
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 139 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPG--FAFIEFENLQEAED 309
+ ++++GG + I E L +G L + +V+ N AF+E+ +
Sbjct: 35 VEDSSNKIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAFLEYTDGSVTLK 94
Query: 310 ACSAMNGTEMLGATL 354
AC+ +NG + G+ +
Sbjct: 95 ACAGLNGMRLGGSVI 109
>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 357
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +1
Query: 187 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 309
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 345
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +1
Query: 187 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 309
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +1
Query: 187 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 309
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 126 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 172
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 330
VYV + + + +E L F G++ + +P FAF+EF + Q A A S + G
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALS-LGG 188
Query: 331 TEMLG 345
T M+G
Sbjct: 189 T-MIG 192
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +1
Query: 196 EDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 363
ED+ EF KYG+L + V N G ++ + +L+ A A ++NG G + E
Sbjct: 309 EDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCE 368
>At1g05510.1 68414.m00563 expressed protein
Length = 241
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 151 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVW 246
G +++ G+ E I+++DLE+ YGK+ W
Sbjct: 121 GGFLFMPGVPEAIQRQDLEKVAKTYGKVYHFW 152
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 160 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 249
+YVGGL I ++D+ F YG++ S+ V
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 321
+++VGG+ + +++L+ F KYG + V + GF F+ F++ + ++ S
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 322 MNGTEM 339
N +M
Sbjct: 170 GNMIDM 175
>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
similarity to dienelactone hydrolase [Rhodococcus
opacus] GI:23094407; contains Pfam profile PF01738:
Dienelactone hydrolase family
Length = 310
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 175 LVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 339
L IKK + + L +++ G +E ++ E E+AC +NGTE+
Sbjct: 37 LASSIKKHITTSFYRRGSSLKNIYALETSDGAINVEVDD-DEEEEACELVNGTEV 90
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV------ALNPPGFAFIEFENLQEAEDACS 318
+++VG L IKK + E F ++G + +V + GF FI + + A A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 319 AMNGTEMLGATLKVEI 366
+G E G L V++
Sbjct: 226 -FDGVEFHGRILTVKL 240
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +1
Query: 154 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 318
+++ V L ++ L+REF +G++ V + + G+AFI+F + +A A
Sbjct: 40 SKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99
Query: 319 AMNGTEMLGATLKVEISR 372
M+ G + ++I++
Sbjct: 100 TMDRRMYNGRMIYIDIAK 117
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 287 SNSM-KAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPP 147
S+SM KA+P S T S P LS S P++RP T TR P
Sbjct: 230 SSSMDKARPSLSSRPSTPTSRPQLSASSPNIIASRPNSRPSTPTRRSP 277
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 160 VYVGGLVEGIKKED---LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 330
++V GL E +K + L REF Y + + + + FAF F +LQ A A+NG
Sbjct: 37 LFVAGLPEDVKPREIYNLFREFPGY-ETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNG 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,675,719
Number of Sequences: 28952
Number of extensions: 187134
Number of successful extensions: 788
Number of sequences better than 10.0: 187
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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