Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o22
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.77 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    24   1.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.1  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    22   4.1  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +1

Query: 481 MVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPN 624
           +  + R+    L  G GF+K  E E  L     RH++    C  + P+
Sbjct: 608 VTSLNREEIKRLDNGVGFLKVKENEITLLVATVRHVMAPSTCQPQNPD 655


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 548 SANLMKPKPLDSPVRVSRFT*TISKSPKEEK*SRTASS 435
           +ANL++P P  SP+  S    T S+  K  +    ASS
Sbjct: 104 AANLLRPHPYLSPLFHSAAPRTASRETKSSESDSGASS 141


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 614  RTSHQRPSIMCRRPNARS 561
            R S  RPS+  R PN ++
Sbjct: 1432 RVSQARPSVQLRYPNGKA 1449


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 614  RTSHQRPSIMCRRPNARS 561
            R S  RPS+  R PN ++
Sbjct: 1432 RVSQARPSVQLRYPNGKA 1449


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 363 TRGIAAASTTMLRSYSSRLTMEDDRRSCTRLLLLL 467
           TR IAA ++  + S  S + + DD      L  LL
Sbjct: 247 TRRIAAVASEKVTSEKSWIALNDDYNRLCHLCFLL 281


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,686
Number of Sequences: 336
Number of extensions: 2927
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)