Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10o22
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 70 2e-12
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 70 2e-12
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 70 2e-12
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 69 2e-12
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 68 5e-12
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 67 1e-11
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 67 1e-11
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 67 1e-11
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 65 4e-11
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 65 4e-11
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 63 2e-10
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 62 4e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 61 8e-10
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 60 1e-09
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 59 2e-09
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 57 1e-08
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 57 1e-08
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 57 1e-08
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 56 2e-08
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 56 2e-08
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 56 2e-08
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 56 2e-08
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 56 3e-08
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 55 5e-08
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 55 5e-08
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 54 7e-08
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 54 7e-08
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 53 2e-07
At5g51300.2 68418.m06360 splicing factor-related contains simila... 52 5e-07
At5g51300.1 68418.m06359 splicing factor-related contains simila... 52 5e-07
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 52 5e-07
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 52 5e-07
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 51 6e-07
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 51 8e-07
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 51 8e-07
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 51 8e-07
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 50 1e-06
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 50 1e-06
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 50 2e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 49 3e-06
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 49 3e-06
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 49 3e-06
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 48 4e-06
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 48 4e-06
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 48 4e-06
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 48 6e-06
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 48 6e-06
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 48 6e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 48 6e-06
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 48 6e-06
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 48 6e-06
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 48 6e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 48 6e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 48 6e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 48 6e-06
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 48 8e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 48 8e-06
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 47 1e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 46 2e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 46 2e-05
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 46 2e-05
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 46 3e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 46 3e-05
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 45 4e-05
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 44 7e-05
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 44 7e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 44 1e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 44 1e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 44 1e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 43 2e-04
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 42 3e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 42 3e-04
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 42 3e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 42 4e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 42 4e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 4e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 42 4e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 41 7e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 41 7e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 41 7e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 41 7e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 40 0.001
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 40 0.001
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 40 0.001
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 40 0.002
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 40 0.002
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 40 0.002
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 40 0.002
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 40 0.002
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 40 0.002
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 40 0.002
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 40 0.002
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 40 0.002
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 39 0.003
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 39 0.003
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 39 0.004
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 39 0.004
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 39 0.004
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 38 0.005
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 38 0.005
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 38 0.005
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 38 0.005
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 38 0.006
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 38 0.006
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 38 0.006
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 38 0.006
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 38 0.006
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 38 0.006
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 38 0.006
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 38 0.006
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 38 0.008
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 38 0.008
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 38 0.008
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 38 0.008
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 38 0.008
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.008
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 37 0.011
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 37 0.014
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 36 0.019
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 36 0.025
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 36 0.025
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 36 0.025
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 36 0.025
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 36 0.033
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 36 0.033
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 36 0.033
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 35 0.044
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 35 0.044
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.058
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 35 0.058
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 35 0.058
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 35 0.058
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 35 0.058
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 35 0.058
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 34 0.077
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 34 0.10
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 34 0.10
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 34 0.10
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 33 0.14
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 33 0.14
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 33 0.18
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 33 0.18
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 32 0.31
At4g21930.1 68417.m03172 expressed protein contains Pfam profile... 31 0.72
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 31 0.72
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 31 0.72
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 31 0.95
At3g32930.1 68416.m04173 expressed protein 30 1.3
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 30 1.3
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 30 1.3
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 1.7
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 30 1.7
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 29 2.2
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 29 2.2
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 29 2.2
At1g68150.1 68414.m07785 WRKY family transcription factor simila... 29 2.2
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 28 6.7
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 28 6.7
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 28 6.7
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 28 6.7
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 27 8.9
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 27 8.9
At1g27660.1 68414.m03381 ethylene-responsive protein -related co... 27 8.9
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 27 8.9
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 27 8.9
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 27 8.9
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/84 (38%), Positives = 49/84 (58%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L + G+ W T EE +RDYFS++GD++ + RD TG ++GFGFI FA+ R + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 583 HMIDGRWCDVRIPNGKDGSSTAHR 654
H+IDGR + + +D R
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKR 91
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 391 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 570
R + V GLP TEE ++YF FG + V V D T +GFGFI F +A R
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 571 LGRR-HMIDGRWCDVR 615
L + H ++G+ +V+
Sbjct: 168 LHKTFHELNGKLVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/84 (38%), Positives = 49/84 (58%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L + G+ W T EE +RDYFS++GD++ + RD TG ++GFGFI FA+ R + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 583 HMIDGRWCDVRIPNGKDGSSTAHR 654
H+IDGR + + +D R
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKR 91
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 391 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 570
R + V GLP TEE ++YF FG + V V D T +GFGFI F +A R
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 571 LGRR-HMIDGRWCDVR 615
L + H ++G+ +V+
Sbjct: 168 LHKTFHELNGKLVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/84 (38%), Positives = 49/84 (58%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L + G+ W T EE +RDYFS++GD++ + RD TG ++GFGFI FA+ R + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 583 HMIDGRWCDVRIPNGKDGSSTAHR 654
H+IDGR + + +D R
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKR 91
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 391 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 570
R + V GLP TEE ++YF FG + V V D T +GFGFI F +A R
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 571 LGRR-HMIDGRWCDVR 615
L + H ++G+ +V+
Sbjct: 168 LHKTFHELNGKLVEVK 183
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 69.3 bits (162), Expect = 2e-12
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L+VLG+PW + ++DY S FGDL V +D TG S+GFG++ FA E AL
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE 64
Query: 583 HMIDGRWCDVRIPNGKDGSSTAHRKV---FVGRCTENIT 690
H + R +V++ K+ +KV FV R +++
Sbjct: 65 HFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVS 103
Score = 44.8 bits (101), Expect = 5e-05
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = +1
Query: 376 PPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 555
P R + + V LP + + + +RDYF FG + + +D + +GFGF+ FAE
Sbjct: 233 PTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENG 292
Query: 556 AQLRALGRRHMIDGR 600
R R H I G+
Sbjct: 293 VADRVARRSHEICGQ 307
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 68.1 bits (159), Expect = 5e-12
Identities = 33/84 (39%), Positives = 49/84 (58%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L + G+ W T E +R+YFS+FG++L V V R+ TG +GFGF+ F++ R L +
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 583 HMIDGRWCDVRIPNGKDGSSTAHR 654
H ID R DV+ ++ S A R
Sbjct: 68 HHIDNRDVDVKRAMSREEQSPAGR 91
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +1
Query: 391 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF-AEYEAQLR 567
R + V GLP T + R YF ++G + + D T +GFGF+ F +E L
Sbjct: 108 RTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLV 167
Query: 568 ALGRRHMIDGRWCDVRIPNGKDGS 639
H ++G+ +V+ KD +
Sbjct: 168 LHKTFHDLNGKQVEVKRALPKDAN 191
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/66 (40%), Positives = 45/66 (68%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L + G+ W+T+E+ +RDYF SFG++L + +D TG ++GFGF+ FA+ R + +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 583 HMIDGR 600
H+IDG+
Sbjct: 68 HIIDGK 73
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 373 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 552
SP P + V GL TE + YF+ FG + V V D RT +GFGFI +
Sbjct: 99 SPGPS-NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE 157
Query: 553 EAQLRALGRR-HMIDGRWCDVRIPNGKD 633
EA + L + H ++G+ +V++ KD
Sbjct: 158 EAVDKVLQKTFHELNGKMVEVKLAVPKD 185
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/66 (40%), Positives = 45/66 (68%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L + G+ W+T+E+ +RDYF SFG++L + +D TG ++GFGF+ FA+ R + +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 583 HMIDGR 600
H+IDG+
Sbjct: 68 HIIDGK 73
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 373 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 552
SP P + V GL TE + YF+ FG + V V D RT +GFGFI +
Sbjct: 99 SPGPS-NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE 157
Query: 553 EAQLRALGRR-HMIDGRWCDVRIPNGKD 633
EA + L + H ++G+ +V++ KD
Sbjct: 158 EAVDKVLQKTFHELNGKMVEVKLAVPKD 185
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/84 (35%), Positives = 47/84 (55%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L + G+ W T EE +++YF +GDL+ + RD TG ++GFGFI FA+ R + +
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 583 HMIDGRWCDVRIPNGKDGSSTAHR 654
H+IDGR + + +D R
Sbjct: 77 HIIDGRTVEAKKAVPRDDQQVLKR 100
Score = 48.8 bits (111), Expect = 3e-06
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +1
Query: 391 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 570
R + V GLP TE ++YF FG + V V D T +GFGFI F E+
Sbjct: 120 RTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV 179
Query: 571 LGRR-HMIDGRWCDVRIPNGKD-GSSTAHRKVFVG 669
L + H ++G+ +V+ K+ S+T +R +G
Sbjct: 180 LHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIG 214
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 65.3 bits (152), Expect = 4e-11
Identities = 28/84 (33%), Positives = 49/84 (58%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L + G+ W T EE +++YFSSFG+++ + +D TG ++GFGF+ FA+ + +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 583 HMIDGRWCDVRIPNGKDGSSTAHR 654
H IDGR + + +D + +R
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNR 91
Score = 45.2 bits (102), Expect = 4e-05
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +1
Query: 373 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 552
SP R + V GLP TE + YF FG V V D T +GFGFI +
Sbjct: 100 SPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSE 159
Query: 553 EAQLRALGRR-HMIDGRWCDVR 615
EA + L + H ++G+ +V+
Sbjct: 160 EAVEKVLLKTFHELNGKMVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 65.3 bits (152), Expect = 4e-11
Identities = 28/84 (33%), Positives = 49/84 (58%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L + G+ W T EE +++YFSSFG+++ + +D TG ++GFGF+ FA+ + +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 583 HMIDGRWCDVRIPNGKDGSSTAHR 654
H IDGR + + +D + +R
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNR 91
Score = 45.2 bits (102), Expect = 4e-05
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +1
Query: 373 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 552
SP R + V GLP TE + YF FG V V D T +GFGFI +
Sbjct: 100 SPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSE 159
Query: 553 EAQLRALGRR-HMIDGRWCDVR 615
EA + L + H ++G+ +V+
Sbjct: 160 EAVEKVLLKTFHELNGKMVEVK 181
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 382 PRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQ 561
P R + + V GLPW T E + YF FG+++ +V D T SKGFGF+ F E E+
Sbjct: 4 PNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESA 63
Query: 562 LRAL-GRRHMIDGRWCDVRI 618
RA H IDGR + ++
Sbjct: 64 TRACENPNHTIDGRTVNCKL 83
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 61.7 bits (143), Expect = 4e-10
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L V G+ W+TT E +YF FG+++ + D TG +GFGF+ FA+ + L
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEED 127
Query: 583 HMIDGRWCDVR--IPNG-KDGSSTA---HRKVFVG 669
H+ID R D++ +P G KD A RK+FVG
Sbjct: 128 HVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVG 162
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEA--QLRALG 576
+ V GLP E+ +++YF +GD++ Q+ D TG S+GFGF+ F ++ +L + G
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDG 218
Query: 577 RRHMIDGRWCDVR 615
+ H + + +++
Sbjct: 219 KVHELGDKQVEIK 231
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 60.9 bits (141), Expect = 8e-10
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +1
Query: 391 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 570
+ + + V GL W+T + +R YF FG+++ V D TG SKG+GF+ F E EA +RA
Sbjct: 20 KLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRA 79
Query: 571 LGRRH-MIDGR 600
+ +IDGR
Sbjct: 80 CQNMNPVIDGR 90
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/71 (38%), Positives = 44/71 (61%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L V G+ W+T E+ +R++F+++G++ V RD TG +GFGF+ F++ R L +
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 583 HMIDGRWCDVR 615
H ID R DV+
Sbjct: 68 HSIDTREVDVK 78
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
+ V GLP T+E R YF +G + V + D T +GFGF+ F +A L +
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKT 171
Query: 583 -HMIDGRWCDVRIPNGKDGS 639
H + G+ +V+ KD +
Sbjct: 172 FHDLSGKQVEVKRALPKDAN 191
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +1
Query: 391 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 570
R + + V L W+TT + +R YF FG ++ V +T G SKG+GFI F +Y + +RA
Sbjct: 10 RVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRA 69
Query: 571 L-GRRHMIDGR 600
L + +IDGR
Sbjct: 70 LQNSKPIIDGR 80
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
+ V GL W+T + +R YF FG++L + D TG SKG+GF+ F E ++ RA+
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 583 H-MIDGRWCDVRI 618
+ +IDGR + I
Sbjct: 79 NPVIDGRKANCNI 91
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
+ V GL W+T + +R YF FG++L + D TG SKG+GF+ F E ++ RA+
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 583 H-MIDGRWCDVRI 618
+ +IDGR + I
Sbjct: 79 NPVIDGRKANCNI 91
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGR 579
+ V GL W+T E +R +F +GD+L V D TG SKG+GF+ F + EA RA +
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDP 85
Query: 580 RHMIDGR 600
+IDGR
Sbjct: 86 TPIIDGR 92
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 56.4 bits (130), Expect = 2e-08
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Frame = +1
Query: 337 AYRYWCAFPRAESPPP-RPRC---SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDT 504
A R+ P+AES P RP+ ++L V GL +TT E +R F+ FG++ +V D
Sbjct: 32 ASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDR 91
Query: 505 RTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 609
+G SKGFGF+++A E + + +DG++ D
Sbjct: 92 VSGYSKGFGFVRYATLEDSAKGIAG---MDGKFLD 123
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
+ V GL W+T + +R YF FG++L + D TG SKG+GF+ F + ++ RA+
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADP 78
Query: 583 H-MIDGRWCDVRIPN-GKDGSST 645
+ +IDGR + I + G+ ST
Sbjct: 79 NPVIDGRKANCNIASFGRPRPST 101
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/68 (39%), Positives = 43/68 (63%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 576
S L + GL W E++++D FSSFG++ V++ D +G S+GFGF+ FAE + AL
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE---EGDALS 97
Query: 577 RRHMIDGR 600
+ +DG+
Sbjct: 98 AKDAMDGK 105
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/71 (40%), Positives = 44/71 (61%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L V G+ +T+EEA++ YFS +G +L V ++ TG +GFGF++FA ++AL
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 583 HMIDGRWCDVR 615
H I G+ DVR
Sbjct: 68 HFILGKPVDVR 78
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 391 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF-AEYEAQLR 567
R + V GL TTEE + YF FG V V D T +GFGF+ + +E ++
Sbjct: 118 RTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVV 177
Query: 568 ALGRRHMIDGRWCDVRIPNGKDG 636
H + + +V+ K+G
Sbjct: 178 MQSNFHELSDKRVEVKRAIPKEG 200
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG-R 579
+ V GL W+T E +R +F +G++L V D TG SKG+GF+ F + EA RA
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADP 85
Query: 580 RHMIDGR 600
+IDGR
Sbjct: 86 TPIIDGR 92
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGR 579
+ V GL W+T + ++R+YF FGD++ V D +G SKG+GF+ F + EA +A +
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDP 68
Query: 580 RHMIDGR 600
+IDGR
Sbjct: 69 APVIDGR 75
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGR 579
+ V GL W+T + ++R+YF FGD++ V D +G SKG+GF+ F + EA +A +
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDP 68
Query: 580 RHMIDGR 600
+IDGR
Sbjct: 69 APVIDGR 75
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 54.4 bits (125), Expect = 7e-08
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
+ + GL TT +F +G++ + RD TG +GFGFI FA+ + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 583 HMIDGRWCDVR--IPNGKDGSSTAH---RKVFVGRCTENIT 690
H+I+G+ +++ IP G G+ + +K+FVG +T
Sbjct: 81 HVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVT 121
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
+ V G+P TE+ ++D+F+ +G+++ QV RD T S+GFGF+ F E L +
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 583 HMID 594
+MID
Sbjct: 171 NMID 174
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 54.4 bits (125), Expect = 7e-08
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
+ + GL TT +F +G++ + RD TG +GFGFI FA+ + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 583 HMIDGRWCDVR--IPNGKDGSSTAH---RKVFVGRCTENIT 690
H+I+G+ +++ IP G G+ + +K+FVG +T
Sbjct: 81 HVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVT 121
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
+ V G+P TE+ ++D+F+ +G+++ QV RD T S+GFGF+ F E L +
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 583 HMID 594
+MID
Sbjct: 171 NMID 174
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGR 579
+ V GL W+T +E ++ +F FG++L V D +G SKG+GF+ F E EA A +
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 580 RHMIDGR 600
+IDGR
Sbjct: 75 TPVIDGR 81
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGR 579
+ V GL W+T +E ++ +F FG++L V D +G SKG+GF+ F E EA A +
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 580 RHMIDGR 600
+IDGR
Sbjct: 75 TPVIDGR 81
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGR 579
+ V GL W+T +E ++ +F FG++L V D +G SKG+GF+ F E EA A +
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 580 RHMIDGR 600
+IDGR
Sbjct: 75 TPVIDGR 81
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = +1
Query: 376 PPPRPRCSDLIVLG-LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 552
PP + + +G LP ++ + + FSSFG+++M +V +D TGLSKG+GF+K+A+
Sbjct: 472 PPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADV 531
Query: 553 EAQLRALG--RRHMIDGRWCDVRI 618
+ A+ + +GR VRI
Sbjct: 532 QMANTAVQAMNGYRFEGRTLAVRI 555
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = +1
Query: 376 PPPRPRCSDLIVLG-LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 552
PP + + +G LP ++ + + FSSFG+++M +V +D TGLSKG+GF+K+A+
Sbjct: 472 PPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADV 531
Query: 553 EAQLRALG--RRHMIDGRWCDVRI 618
+ A+ + +GR VRI
Sbjct: 532 QMANTAVQAMNGYRFEGRTLAVRI 555
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 51.6 bits (118), Expect = 5e-07
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L + GL W T + ++RD F+ FGD++ +V D TG S+GFGF+ F + A A+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 583 --HMIDGRWCDVRIPNGKDGSSTAH 651
++GR V N + + A+
Sbjct: 97 DGKELNGRHIRVNPANDRPSAPRAY 121
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 51.6 bits (118), Expect = 5e-07
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L + GL W T + ++RD F+ FGD++ +V D TG S+GFGF+ F + A A+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 583 --HMIDGRWCDVRIPNGKDGSSTAH 651
++GR V N + + A+
Sbjct: 97 DGKELNGRHIRVNPANDRPSAPRAY 121
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/56 (39%), Positives = 35/56 (62%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 570
+ V GLPW T +E + ++F FG+++ V V D T S+G+GF+ F + E+ RA
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRA 70
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 50.8 bits (116), Expect = 8e-07
Identities = 27/74 (36%), Positives = 40/74 (54%)
Frame = +1
Query: 373 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 552
S P RC + GL W T++ +RD F +G L+ +V D +G S+GFGFI F E
Sbjct: 2 SEDPEYRC---FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEK 58
Query: 553 EAQLRALGRRHMID 594
+A A+ + +D
Sbjct: 59 KAMDEAIAAMNGMD 72
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 50.8 bits (116), Expect = 8e-07
Identities = 30/67 (44%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR- 579
L + GL TT E +R FSS+GDL V D TG SKG+GF+ F + L AL
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEP 136
Query: 580 RHMIDGR 600
IDGR
Sbjct: 137 SKKIDGR 143
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
+ V +P+ + + ++F ++GD+ + D TG S+GF + E AL
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADP 228
Query: 583 -HMIDGRWCDVRIP-NGKDG 636
+IDG+ + ++ +GK G
Sbjct: 229 VKVIDGKHLNCKLAVDGKKG 248
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 50.8 bits (116), Expect = 8e-07
Identities = 30/67 (44%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR- 579
L + GL TT E +R FSS+GDL V D TG SKG+GF+ F + L AL
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEP 136
Query: 580 RHMIDGR 600
IDGR
Sbjct: 137 SKKIDGR 143
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
+ V +P+ + + ++F ++GD+ + D TG S+GF + E AL
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADP 228
Query: 583 -HMIDGRWCDVRIP-NGKDG 636
+IDG+ + ++ +GK G
Sbjct: 229 VKVIDGKHLNCKLAVDGKKG 248
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +1
Query: 361 PRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIK 540
P + S P+ + L V GL ++TTE+ +RD F FG+L+ + + D KGF F++
Sbjct: 68 PPSSSSGPKTK---LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLR 124
Query: 541 FAEYEAQLRALGRRH--MIDGR 600
+ E ++A+ H +DGR
Sbjct: 125 YETEEEAMKAIQGMHGKFLDGR 146
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +1
Query: 391 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 570
+ + + V GL W T +EA+ D+F +GD+L + D T SKG+GF+ F + +A RA
Sbjct: 15 KLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRA 74
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
+ V GL +TT +F +G++ + +D +TG +GFGF+ +A+ + +
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN 103
Query: 583 HMIDGRWCDVR--IPNGKDGSST-AHRKVFVG 669
H+I G+ +++ IP G S+ +K+FVG
Sbjct: 104 HIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVG 135
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +1
Query: 361 PRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIK 540
PR + + V G+P ++ +++F FG+L Q+ RD TG S+GFGF+
Sbjct: 118 PRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVT 177
Query: 541 FAEYEA--QLRALGRRHMIDGRWCDVRIPNGKDGSS 642
+ + L A G R + G +++ K +S
Sbjct: 178 YESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNS 213
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Frame = +1
Query: 376 PPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 555
PP L+VL + ++TT + + F+ +G ++ V + RD RTG S+GF F+++ +
Sbjct: 9 PPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKD 68
Query: 556 AQLRALGR--RHMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTE 681
+A+ R ++DGR ++ + K G + K+ GR E
Sbjct: 69 EAHKAVERLDGRVVDGR--EITVQFAKYGPNA--EKISKGRVVE 108
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Frame = +1
Query: 376 PPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 555
PP L+VL + ++TT + + F+ +G ++ V + RD RTG S+GF F+++ +
Sbjct: 9 PPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKD 68
Query: 556 AQLRALGR--RHMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTE 681
+A+ R ++DGR ++ + K G + K+ GR E
Sbjct: 69 EAHKAVERLDGRVVDGR--EITVQFAKYGPNA--EKISKGRVVE 108
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +1
Query: 388 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 567
P S ++V LP+ T+E+ ++ FS+FG++ V++ +D SKG+ FI+F +
Sbjct: 37 PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96
Query: 568 ALGR--RHMIDGR--WCDVRIPNGKD 633
A+ R M +GR + D+ P +D
Sbjct: 97 AIETMDRRMYNGRMIYIDIAKPGKRD 122
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 415 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--M 588
GL W T +E ++ FS FGD++ ++ D +G S+GFGF+ F + +A A+ +
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKE 71
Query: 589 IDGR 600
+DGR
Sbjct: 72 LDGR 75
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 415 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--M 588
GL W T +E ++ FS FGD++ ++ D +G S+GFGF+ F + +A A+ +
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKE 71
Query: 589 IDGR 600
+DGR
Sbjct: 72 LDGR 75
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 415 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--M 588
GL W T +E ++ FS FGD++ ++ D +G S+GFGF+ F + +A A+ +
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKE 71
Query: 589 IDGR 600
+DGR
Sbjct: 72 LDGR 75
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 48.0 bits (109), Expect = 6e-06
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA---EYEAQLRAL 573
L V +P TEE +R YF G++L V + +D RTG +G F+K+A + + +RAL
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 574 GRRHMIDGRW--CDVRIPNG-KDGSSTAHRKVFVGRCTENIT 690
+ + G VR +G ++ T K+FVG + T
Sbjct: 182 HNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQAT 223
Score = 31.9 bits (69), Expect = 0.41
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
L V L + TE+ V + F FG + V + RD S+G GF+K++ E + A+
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQ-SRGCGFVKYSSKETAMAAI 268
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 48.0 bits (109), Expect = 6e-06
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA---EYEAQLRAL 573
L V +P TEE +R YF G++L V + +D RTG +G F+K+A + + +RAL
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 574 GRRHMIDGRW--CDVRIPNG-KDGSSTAHRKVFVGRCTENIT 690
+ + G VR +G ++ T K+FVG + T
Sbjct: 182 HNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQAT 223
Score = 31.9 bits (69), Expect = 0.41
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
L V L + TE+ V + F FG + V + RD S+G GF+K++ E + A+
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQ-SRGCGFVKYSSKETAMAAI 268
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA 546
S L V GL W T + +++ F+SFG++ V D TG S+GFGF+ F+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA 546
S L V GL W T + +++ F+SFG++ V D TG S+GFGF+ F+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 555
L V GL TT E ++D F+SFG L+ +V D +G SKGFGF+ +A E
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIE 86
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+ V GLPW+TT E + F +G++ V D TG +KGFGF+ F + AL
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+ V GLPW+TT E + F +G++ V D TG +KGFGF+ F + AL
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 48.0 bits (109), Expect = 6e-06
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +1
Query: 415 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL-GRRHM- 588
GL W T + A+ F+ +GD++ ++ D TG S+GFGF+ F + +A A+ G
Sbjct: 14 GLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQD 73
Query: 589 IDGRWCDVRIPNGK-DGSSTAHR 654
+DGR V + G HR
Sbjct: 74 LDGRSITVNEAQSRGSGGGGGHR 96
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 48.0 bits (109), Expect = 6e-06
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +1
Query: 415 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL-GRRHM- 588
GL W T + A+ F+ +GD++ ++ D TG S+GFGF+ F + +A A+ G
Sbjct: 14 GLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQD 73
Query: 589 IDGRWCDVRIPNGK-DGSSTAHR 654
+DGR V + G HR
Sbjct: 74 LDGRSITVNEAQSRGSGGGGGHR 96
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 48.0 bits (109), Expect = 6e-06
Identities = 27/57 (47%), Positives = 34/57 (59%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
L V L +E+ +R F SFG + +VQV RD TGL KGFGF++FA E AL
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNAL 342
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 427 KTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 543
+ TE V ++FS G + V++ D + S+G G+++F
Sbjct: 192 RATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEF 230
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/68 (33%), Positives = 40/68 (58%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 576
S L + G+ + E+++R+ F+ +G+++ +V D TG S+GFGF+ F EA A+
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI- 98
Query: 577 RRHMIDGR 600
+DGR
Sbjct: 99 --QALDGR 104
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +1
Query: 415 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
GL W T +E ++ FS FGD++ ++ D +G S+GFGF+ F + +A A+
Sbjct: 12 GLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 373 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY 552
SP P + V GL TE + YF+ FG + V V D RT +GFGFI +
Sbjct: 26 SPGPS-NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE 84
Query: 553 EAQLRALGRR-HMIDGRWCDVRIPNGKD 633
EA + L + H ++G+ +V++ KD
Sbjct: 85 EAVDKVLQKTFHELNGKMVEVKLAVPKD 112
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/86 (33%), Positives = 44/86 (51%)
Frame = +1
Query: 319 PAEGWPAYRYWCAFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKR 498
P EG PA + +PP + + + L + +P E + +FS FG + V+V R
Sbjct: 39 PLEGGPARK-----APVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVAR 93
Query: 499 DTRTGLSKGFGFIKFAEYEAQLRALG 576
+ +TG SK FGFI+F + E A G
Sbjct: 94 NKKTGKSKHFGFIQFEDPEVAEIAAG 119
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 576
S + V GL + T+ + FS FGD+L Q+ + TG S+GFGFI FA+ A ++
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 577 RRH 585
H
Sbjct: 67 EMH 69
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +1
Query: 388 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 567
P C+ L V L TTE+ +R+ S +G + +++ R TG S+G+GF+++ + LR
Sbjct: 62 PYCT-LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLR 120
Query: 568 ALGRRH--MIDGR 600
A H +IDGR
Sbjct: 121 AYEDAHHSLIDGR 133
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 415 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--M 588
GL W T E+++ F+ FG++ ++ D TG SKGF F+ F + ++ A+ R +
Sbjct: 50 GLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQE 109
Query: 589 IDGR 600
+DGR
Sbjct: 110 LDGR 113
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/69 (34%), Positives = 41/69 (59%)
Frame = +1
Query: 367 AESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA 546
+ESPP + + L + GL + T+E+ +R F FG+L+ V++ D + SKG+ F+++
Sbjct: 274 SESPPVKTK--KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYT 331
Query: 547 EYEAQLRAL 573
EA AL
Sbjct: 332 TEEAAGTAL 340
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +1
Query: 400 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 579
++ V G W TT+E ++ F S+G++ V D TG KG+GF+ F + AL R
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR 468
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/101 (25%), Positives = 48/101 (47%)
Frame = +1
Query: 388 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 567
P S++ + GLP EE +RD G++ V++ +D +G SKG+ F+ F + +
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172
Query: 568 ALGRRHMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENIT 690
A+ H + + +R S ++F+G +N T
Sbjct: 173 AIEELHSKEFKGKTIRC-----SLSETKNRLFIGNIPKNWT 208
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL--G 576
L V +P T+ E +++ F G++ ++ G + FGF+ +AE + L+A+
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDT 351
Query: 577 RRHMIDGRWCDV 612
R+ ++G+ +V
Sbjct: 352 ERYEVNGQPLEV 363
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
S L + GL + TTE+ + + FS G ++ Q+ D + SKGFGF+ FA + +AL
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +1
Query: 418 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
LPW T + +R++FS FG ++ +V D +TG ++ F F+ F E + AL
Sbjct: 219 LPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL 270
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1
Query: 376 PPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI 537
P +PR +L V +P + D F FG ++ V+V R+ +TG S+G G++
Sbjct: 101 PVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYV 154
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 576
+ L V L TT++++R FS FG + ++ RD+ T KGFGFI F + +AL
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL- 65
Query: 577 RRHMIDGRWCDVRI 618
+DG+ D R+
Sbjct: 66 --KSLDGKIVDGRL 77
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +1
Query: 400 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
++ V GL W TT E ++ F +G++ V D TG +KGFGF+ F + AL
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAAL 221
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Frame = +1
Query: 361 PRAESPPPRPRCSDLIVLG-LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI 537
P+ P P + +G L W T E++ F GD++ +V D TG S+G+GF+
Sbjct: 164 PKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
Query: 538 KF---AEYEAQLRALGRRHMIDGRWCDVRIPNGK 630
+ AE E L +L ++GR V + GK
Sbjct: 224 CYSSKAEMETALESLD-GFELEGRAIRVNLAQGK 256
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 379 PPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 555
PP + L LP+ + F + +V+V + TG S+GF F+ + E
Sbjct: 79 PPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVE 137
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Frame = +1
Query: 355 AFPRAESPPPRPRCSD----LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSK 522
A PR P +PR D + V LPW + FS G ++ +V D TG S+
Sbjct: 189 AAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSR 248
Query: 523 GFGFIKFA---EYEAQLRALGRRHMIDGRWCDVRI 618
GFGF++ + E + AL ++ ++GR V +
Sbjct: 249 GFGFVQMSNENEVNVAIAALDGQN-LEGRAIKVNV 282
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +1
Query: 379 PPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEA 558
P P + L V LP+ +A+ F G + + +V + T S+GFGF+ + E
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 559 QLRAL 573
+A+
Sbjct: 167 AEKAV 171
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +1
Query: 388 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 555
P L V L + +E +R F +FG + +VQ+ D TG KGFGFI+F + E
Sbjct: 262 PADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLE 317
Score = 34.3 bits (75), Expect = 0.077
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 370 ESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 543
E+ P R + + + +P K TE V ++FS G + V++ D + SKG G+I+F
Sbjct: 160 EADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 216
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR- 579
++V GL K+TEE + + +G L V+V R+ +G+S+GF FI F +A + R
Sbjct: 300 VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRI 359
Query: 580 RH---MIDGR 600
H ++DGR
Sbjct: 360 EHDGIVLDGR 369
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
L+V GL EE +R FS + +++ RD T +S+GF F+ F E +AL
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKAL 516
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
L V G+P+++TE+ +R YF S G ++ V K G G FI F + RAL
Sbjct: 163 LYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRAL 219
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 418 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 549
L W TTE +R FS + V++ ++ TG KG+ + F +
Sbjct: 269 LAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKD 311
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
S + V G+ + T E +R+ FS +G+++ ++ D TG S+GF F+ F E A+
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
S+L V L T++ +R++F+ FG + +V RD +G+S+G GF+ F+ E RA+
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAI 384
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +1
Query: 400 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 579
++ + L +A+ + FS+FG +L +V D +G SKG+GF+++ EA A+ +
Sbjct: 134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDK 192
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+ L V L T+ + + F+ G ++ V+V RD T S G+G++ +A + RAL
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+++ V L ++E + F FG + RD G SKGFGF+ F + RA+
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAV 281
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 576
S + V GL T E +++ F SFG ++ V D +GLS+GFGF+ + E A+
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 577 --RRHMIDGR 600
+ +DGR
Sbjct: 96 AMQNKELDGR 105
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 427 KTTEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRW 603
+ T+ + D F + +G + +V D TG SKG+GF++FA+ Q+RA+ ++G++
Sbjct: 164 EVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE---MNGQY 220
Query: 604 CDVR 615
C R
Sbjct: 221 CSTR 224
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 576
S L++ LP +RD F FG L + + R+ TG +GFGF+K+ E A+
Sbjct: 47 SGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMK 106
Query: 577 R-RHMIDG 597
R H + G
Sbjct: 107 RMNHKVIG 114
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 409 VLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 579
V L T E + + F FG + V V D +TG+S+GFGF+ F E RA+ +
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL- 573
S L V G+ + +TEE + FS +G +L V V D KGF ++ F+ E +AL
Sbjct: 21 STLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALL 80
Query: 574 -GRRHMIDGR 600
++DGR
Sbjct: 81 ELNAQLVDGR 90
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA 546
+ + V GLP+ TEEAVR FS +G +L V++ D R+ K +GF+ F+
Sbjct: 7 NSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFS 55
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +1
Query: 355 AFPRAESPPPRPRCSD----LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSK 522
A PR P PR + + V LPW + FS G ++ +V D TG S+
Sbjct: 226 AAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSR 285
Query: 523 GFGFIKFAEYE 555
GFGF+ ++ +
Sbjct: 286 GFGFVTMSDVD 296
Score = 32.7 bits (71), Expect = 0.24
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 364 RAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 543
RAE P P L V L + +A+ F G + + +V + T S+GFGF+
Sbjct: 140 RAEFPEPSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTM 198
Query: 544 AEYEAQLRALGR--RHMIDGR 600
+ + A+ + R+ ++GR
Sbjct: 199 SSVDEAETAVEKFNRYDLNGR 219
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/71 (32%), Positives = 39/71 (54%)
Frame = +1
Query: 388 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 567
P ++L + +P + ++ + F SFG +L +V D TG+SK FGF+ Y++Q
Sbjct: 346 PEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFV---SYDSQAA 402
Query: 568 ALGRRHMIDGR 600
A M++GR
Sbjct: 403 AQNAIDMMNGR 413
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +1
Query: 415 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
G+P+ TE + FS +G+++ V + RD TG SKGF F+ + + + + A+
Sbjct: 42 GIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAV 94
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
L V LP+ TEE + ++FS+FG + V + D T S+G +I + E RA+
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAM 319
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 409 VLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
V GL T E+ + D FS FG+++ ++ D TG S+ FGF+ F E ++ A+
Sbjct: 11 VRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/70 (34%), Positives = 38/70 (54%)
Frame = +1
Query: 382 PRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQ 561
P PR +++ V LP + E+ +R F FG + V RD ++G S+ FGF+ F EA
Sbjct: 224 PTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAA 282
Query: 562 LRALGRRHMI 591
A+ + + I
Sbjct: 283 ASAVEKMNGI 292
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +1
Query: 400 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 579
++ + L +A+ + FSSFG +L +V D TG SKG+GF++F + E+ A+ +
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDK 195
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/59 (30%), Positives = 36/59 (61%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
++L + L +E +++ FS +G++ +V + + G+S+GFGF+ ++ E LRAL
Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRAL 389
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +1
Query: 430 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY-EAQLRALGR-RHMIDGRW 603
TT++ +R+ FS +G+++ V RD T S+GFGF+ ++ + EA+ G ++GR
Sbjct: 14 TTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRR 73
Query: 604 CDVRI 618
V++
Sbjct: 74 VSVKL 78
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +1
Query: 382 PRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA--EYE 555
P R S+L V L E +R+ F +G ++ +V G SKGFGF+ F+ E
Sbjct: 299 PNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEES 357
Query: 556 AQLRALGRRHMIDGRWCDVRIPNGKD 633
Q + ++DG+ VR+ K+
Sbjct: 358 KQAKRYLNGFLVDGKPIVVRVAERKE 383
Score = 34.3 bits (75), Expect = 0.077
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+++ V L T++ + FS +G + V V RD G S+GFGF+ F E +A+
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAM 259
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 576
++L V L T + F FG +L +V + G SKGFGF++F ++ + A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQSAVSARS 169
Query: 577 RRH 585
H
Sbjct: 170 ALH 172
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 576
S + V GL W TE + F +G + Q+ TG +GFGFI F + A+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 577 RRH 585
H
Sbjct: 72 HMH 74
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 576
S + V GL W TE + F +G + Q+ TG +GFGFI F + A+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 577 RRH 585
H
Sbjct: 72 HMH 74
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +1
Query: 400 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 579
++ V L + T+ A+ D FS+F +V D +TG S+GFGF+ F + A+
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 580 RHMIDGRWCDVR 615
++G+W R
Sbjct: 209 ---MNGKWVSSR 217
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 549
+ V GLP+ TE VR+ SFG L + +D TG SKG+ F + +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQD 409
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 549
+ V GLP+ TE VR+ SFG L + +D TG SKG+ F + +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQD 409
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 549
+ V GLP+ TE VR+ SFG L + +D TG SKG+ F + +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQD 409
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/99 (25%), Positives = 48/99 (48%)
Frame = +1
Query: 388 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 567
P S++ + G+P TE ++ + S G++ V++ R+ +G KG+ F+ F +
Sbjct: 89 PHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAE 148
Query: 568 ALGRRHMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTEN 684
A+ + D R RI K ++ A ++F+G N
Sbjct: 149 AIDTLNNTDFR--GKRI---KCSTTQAKHRLFLGNVPRN 182
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +1
Query: 400 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG- 576
++ V L +EE ++ F G++ V++ ++ +T SKG F++FA E RA+
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 577 -RRHMIDGRWCDVRIPNGKD 633
+ MI+G+ C V D
Sbjct: 275 LKSPMINGKKCGVTASQDND 294
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEA 558
+ + GL EE VRD +G L V++ R+ + K FGF+ F +EA
Sbjct: 393 IFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA 444
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +1
Query: 400 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 579
+L V L T+E +R+ F+ FG + +V RD +G SKG GF+ F+ R L
Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNE 387
Query: 580 RH--MIDGRWCDVRIPNGKD 633
+ M+ G+ V + K+
Sbjct: 388 MNGKMVGGKPLYVALAQRKE 407
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +1
Query: 394 CSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
CS L V L + T+ + DYF+ ++ V+V RD T S G+G++ ++ + +A+
Sbjct: 46 CS-LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAM 104
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +1
Query: 370 ESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 549
+S R +L V L + + + FS G ++ +V D G S+G+GF++F
Sbjct: 125 DSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDT 183
Query: 550 YEAQLRAL 573
++ A+
Sbjct: 184 EDSAKNAI 191
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 576
S+L V L ++E +++ FS FG + +V RD G SKG GF+ FA E A+
Sbjct: 132 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS 190
Query: 577 R 579
+
Sbjct: 191 Q 191
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +1
Query: 370 ESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 549
+S + + +++ V L TT++ +++ F +G + V +D G SKGFGF+ F
Sbjct: 20 DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFEN 78
Query: 550 YEAQLRAL 573
+ RA+
Sbjct: 79 ADDAARAV 86
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 38.7 bits (86), Expect = 0.004
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI---KFAEYEAQLRAL 573
L V LP+ + F S G++ MV+V D TG S+GFGF+ +E EA +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 574 GRRHMIDGRWCDVRI----PNGKDGSSTAHRKVF 663
+ +DGR V P +DG S R F
Sbjct: 153 -NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSF 185
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 418 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 543
L W + A+ FS G ++ +V D +G SKGFGF+ +
Sbjct: 211 LSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTY 252
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +1
Query: 391 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 570
RC + V +P+ TEE +R+ G ++ ++ D TG KG+GF ++ + E L A
Sbjct: 9 RC--VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSA 66
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
L + GL T E +++D FSSF + +V + TG S+G+GF+ F ++ A+
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +1
Query: 433 TEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 609
T+ + + F + + + +V D TG SKG+GF++FA+ Q+RA+ ++G++C
Sbjct: 185 TDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE---MNGQYCS 241
Query: 610 VR 615
R
Sbjct: 242 SR 243
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 549
+ V GLP+ TE +R+ SFG L + +D TG SKG+ F + +
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQD 425
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 38.3 bits (85), Expect = 0.005
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Frame = +1
Query: 364 RAESPPPRPRC--------SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLS 519
R SP PR R + L+V L +E +R F FG + + + RD TG
Sbjct: 17 RGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDP 76
Query: 520 KGFGFIKFAEYEAQLRALGRRHMIDG 597
+GFGF++F + A +H +DG
Sbjct: 77 RGFGFVQFMD---PADAADAKHHMDG 99
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 349 WCAFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFS-SFGDLLMVQVKRDTRTGLSKG 525
W +F + P S + V L T+ +++ F + + +V D TG SKG
Sbjct: 101 WASFGSGQKVDAGPDHS-IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKG 159
Query: 526 FGFIKFAEYEAQLRALGRRHMIDGRWCDVR 615
+GF+KFAE + RA+ ++G +C R
Sbjct: 160 YGFVKFAEESERNRAMAE---MNGLYCSTR 186
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +1
Query: 418 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
L + E + FS G+L+ V+V R+ TG +G+GFI+F + A R L
Sbjct: 31 LQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +1
Query: 391 RCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 570
+ S++ V + TEE +R +FS G + ++ D + G SKGFGF+ F+ E + A
Sbjct: 302 KVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDA 360
Query: 571 LGRRH--MIDGRWCDVRIPNGKD 633
+ H M G+ V I K+
Sbjct: 361 VKTFHGQMFHGKPLYVAIAQKKE 383
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +1
Query: 400 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
++ V LP T ++D F FG+++ +V G S+G+GF++F + +A A+
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAI 169
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLM-VQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
++L + L E+ + D FS+FG + ++ RD TG S+GFGFI + +EA A+
Sbjct: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +1
Query: 436 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 615
+ +R++FSS G++ V V D TG SKG +++F+E + + L M G + V
Sbjct: 418 KNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKALELNGSDMGGGFYLVVD 477
Query: 616 IPNGKDGSS 642
P + SS
Sbjct: 478 EPRPRGDSS 486
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Frame = +1
Query: 361 PRAESPPP-RPRCSDLI----VLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKG 525
P+A +PP +P +D I + L + E + F+ G+++ +V R+ +TG +G
Sbjct: 45 PQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEG 104
Query: 526 FGFIKFAEYEAQLRAL 573
+GFI+FA + A R L
Sbjct: 105 YGFIEFASHAAAERVL 120
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 460 SSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+S+ + +V D TG +KG+GF++F++ Q+RA+
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Frame = +1
Query: 361 PRAESPPP-RPRCSDLI----VLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKG 525
P+A +PP +P +D I + L + E + F+ G+++ +V R+ +TG +G
Sbjct: 45 PQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEG 104
Query: 526 FGFIKFAEYEAQLRAL 573
+GFI+FA + A R L
Sbjct: 105 YGFIEFASHAAAERVL 120
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 460 SSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+S+ + +V D TG +KG+GF++F++ Q+RA+
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 388 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 567
P ++L + +P + ++ + F FG +L +V D TG+SK FGFI + A
Sbjct: 336 PAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQN 395
Query: 568 AL 573
A+
Sbjct: 396 AI 397
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 388 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 567
P ++L + +P + ++ + F FG +L +V D TG+SK FGFI + A
Sbjct: 327 PAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQN 386
Query: 568 AL 573
A+
Sbjct: 387 AI 388
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 403 LIVLGLPWK-TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF-AEYEAQ 561
+IV LP K TEE +RD FS G++ V++KR + G S+ F +I F E EAQ
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKS-DGKSRQFAYIGFRTEQEAQ 57
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +1
Query: 418 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MI 591
L W T + ++D F +L +V + TG S+GFGFI F E AL + +
Sbjct: 226 LGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEV 285
Query: 592 DGRWCDVRIPNGKDGSSTAHRKVFVGRCTE 681
+GR + + + ++ + + V G E
Sbjct: 286 EGRALRLNLASEREKPTVSPPSVEEGETEE 315
Score = 35.9 bits (79), Expect = 0.025
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG-- 576
L V LP+ T + F G ++ VQ+ D T S+GFGF+ E A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 577 RRHMIDGRWCDVRIP 621
I GR V P
Sbjct: 178 NSSQIGGRTVKVNFP 192
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.5 bits (83), Expect = 0.008
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Frame = +1
Query: 364 RAESPPPRPRC---------SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGL 516
R SP PR R + L+V L +E +R F FG + + + RD TG
Sbjct: 17 RGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGD 76
Query: 517 SKGFGFIKFAEYEAQLRALGRRHMIDG 597
+GFGFI+F + A +H +DG
Sbjct: 77 PRGFGFIQFMD---PADAAEAKHQMDG 100
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+ V GL W T +++ D F +G++ + D +G SKG+GFI F AL
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 451 DYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH 585
++FS FG++ + D TG KGF + E+ +AL H
Sbjct: 245 EFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPH 289
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 543
LI+ LP++ ++ FS+ G + V + ++ TGL KGF F+KF
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L + LP+ T+E V+ F+ FG++ + + T +G F+KF +A + A+
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 583 HMIDG 597
G
Sbjct: 623 DTASG 627
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 409 VLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
V GLP+ T + + FS G + + + + +GF F+KFA E RA+
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAI 78
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/59 (30%), Positives = 36/59 (61%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
S+L + L +E +++ FS +G++ +V +++ GLS+GFGF+ ++ E L A+
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAM 385
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 400 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 579
++ + L +A+ + FSSFG +L +V D G SKG+GF++F + E A+ +
Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDK 191
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +1
Query: 451 DYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 543
D FS+FG +L +V RD +G+SKG+GF++F
Sbjct: 49 DMFSAFGKVLSCKVARDA-SGVSKGYGFVQF 78
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 400 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+L V L + + FS FG + +V + G+SKG GF++F+ E +A+
Sbjct: 224 NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSN-GISKGVGFVEFSTSEEASKAM 280
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL--- 573
++V G+ +T EE + + F FG++ + + D R+G KG+ I++ + E A+
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 574 -GRRHMIDGRWCDVRIPNGKDGSSTAHRK 657
G + D +G G + RK
Sbjct: 157 NGAELLTQNVSVDWAFSSGPSGGESYRRK 185
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 36.3 bits (80), Expect = 0.019
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Frame = +1
Query: 382 PRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQ 561
PR + + L + L + +EE + FS FG ++ + +D R G S+GF FI+F ++
Sbjct: 13 PR-KFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFR-GESRGFAFIEFESADSA 70
Query: 562 LRALGRRHMIDGR------WCDVRIPNGKDG 636
RA+ HM DGR C R P +DG
Sbjct: 71 GRAM--LHM-DGRLIGQKILCVQRTPKVEDG 98
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+ V GL W T E + + F +G++ + D +G SKG+GFI + AL
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +1
Query: 454 YFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH-MIDGR--WCDVRIPN 624
+FS FG++ + D TG KGF + E+ RAL H +G C I
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDG 323
Query: 625 GKDGSSTAH 651
K G H
Sbjct: 324 PKPGKQQQH 332
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+ V GL W T E + + F +G++ + D +G SKG+GFI + AL
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +1
Query: 454 YFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH-MIDGR--WCDVRIPN 624
+FS FG++ + D TG KGF + E+ RAL H +G C I
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDG 323
Query: 625 GKDGSSTAH 651
K G H
Sbjct: 324 PKPGKQQQH 332
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+ V GL W T E + + F +G++ + D +G SKG+GFI + AL
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +1
Query: 454 YFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH-MIDGR--WCDVRIPN 624
+FS FG++ + D TG KGF + E+ RAL H +G C I
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDG 323
Query: 625 GKDGSSTAH 651
K G H
Sbjct: 324 PKPGKQQQH 332
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +1
Query: 418 LPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDG 597
LP + A+ YFSSFG++ V V TG S G+ +I E + LG RH + G
Sbjct: 245 LPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEGAEKALELG-RHDVGG 303
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 35.5 bits (78), Expect = 0.033
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 576
S L V G +E ++ FS FG + V++ + RT S G+G++ F E A+
Sbjct: 77 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136
Query: 577 RRH--MIDGRWCDVRIPNGKDGSSTAHR 654
+ DGR+ V+ G+ G S R
Sbjct: 137 AMNGKFFDGRFILVKF--GQPGLSRRRR 162
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 409 VLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 579
V L T + + F FG + V D +T +S+GFGF+ F E RA+ +
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINK 234
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 35.5 bits (78), Expect = 0.033
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 388 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLR 567
P S L V L + T + FS+FG + V V +D T S+G F+ + E +
Sbjct: 54 PSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAK 113
Query: 568 A 570
A
Sbjct: 114 A 114
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +1
Query: 400 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 579
++ V L + T+ + FS F +V D +TG S+GFGF+ F + A+
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 580 RHMIDGRWCDVR 615
++G+W R
Sbjct: 205 ---MNGKWLSSR 213
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 35.1 bits (77), Expect = 0.044
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +1
Query: 427 KTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF---AEYEAQLRALGRRHM 588
+ ++ + F+ F M +V RD RTG +KG+GF+ F A+ A L+ + +++
Sbjct: 147 EVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYV 203
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.7 bits (76), Expect = 0.058
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Frame = +1
Query: 415 GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF-AEYEAQ--LRALGRRH 585
GL TT++++R F+ F L+ +D +T KGFGFI F +E +AQ L+AL +
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLI-----KDQQTQRPKGFGFITFESEDDAQKALKALNGK- 130
Query: 586 MIDGR 600
+++GR
Sbjct: 131 IVNGR 135
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 34.7 bits (76), Expect = 0.058
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L V L W + A+ + F+ G ++ +V D +G SKGFGF+ + + +A+
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 310
Query: 583 H--MIDGR 600
+ +DGR
Sbjct: 311 NGADLDGR 318
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF---AEYEA 558
L V L + + F S G++ MV+V D TG S+GFGF+ AE EA
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 34.7 bits (76), Expect = 0.058
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L V L W + A+ + F+ G ++ +V D +G SKGFGF+ + + +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 583 H--MIDGR 600
+ +DGR
Sbjct: 319 NGADLDGR 326
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF---AEYEA 558
L V L + + F S G++ MV+V D TG S+GFGF+ AE EA
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 34.7 bits (76), Expect = 0.058
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 576
S + V GL TEE + FS FG+++ V++ + KG GF++FA ++ A+G
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP------VGKGCGFVQFANRQSAEEAIG 380
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 499 DTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 615
D+ TG SKG+GF++F + + RA+ ++G +C R
Sbjct: 248 DSNTGRSKGYGFVRFGDENERSRAMTE---MNGAFCSSR 283
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI 537
+ L V GL + TE + D+F+ G + V + D T S+GFGFI
Sbjct: 45 NSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFI 91
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI 537
+ L V GL + TE + D+F+ G + V + D T S+GFGFI
Sbjct: 75 NSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFI 121
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 34.3 bits (75), Expect = 0.077
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 388 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 543
P ++L + +P + ++ + F SFG +L +V D TG+SK FG + F
Sbjct: 345 PEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 33.9 bits (74), Expect = 0.10
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L V L ++++E ++ F S+G + V + D T KG+ FI++ + ++A ++
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYM-HTRDMKAAYKQ 198
Query: 583 ---HMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENI 687
IDGR V + G+ + R++ G T +
Sbjct: 199 ADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRV 236
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 433 TEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 609
T+ + + FS + + +V D+ TG SKG+GF++F + + RAL ++G +C
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE---MNGAYCS 270
Query: 610 VR 615
R
Sbjct: 271 NR 272
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +1
Query: 400 DLIVLGLPWKTTEEAVRDYFSSFGDLLM----VQVKRDTRTGLSKGFGFIKFAEYEAQLR 567
++ V L + T+ A+ D FS+F +V D +TG S+GFGF+ F +
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQT 208
Query: 568 ALGRRHMIDGRWCDVR 615
A+ ++G+W R
Sbjct: 209 AINE---MNGKWVSSR 221
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +1
Query: 364 RAESPPPRPRCSDLIVL---GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGF 534
+ S P + + +VL L E +++ F +FG+++ V++ D L +G G+
Sbjct: 84 KGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGY 143
Query: 535 IKFAEYEAQLRALGRRHMIDGRWCDVRI 618
+ E++A+ A + +DG D ++
Sbjct: 144 V---EFKARADAEKAQLYMDGAQIDGKV 168
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +1
Query: 364 RAESPPPRPRCSDLIVL---GLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGF 534
+ S P + + +VL L E +++ F +FG+++ V++ D L +G G+
Sbjct: 84 KGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGY 143
Query: 535 IKFAEYEAQLRALGRRHMIDGRWCDVRI 618
+ E++A+ A + +DG D ++
Sbjct: 144 V---EFKARADAEKAQLYMDGAQIDGKV 168
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR 582
L V LP++T + D+F G+++ VQ+ + + G G GF++FA AL ++
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASVNEAEEALQKK 187
Query: 583 H 585
+
Sbjct: 188 N 188
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 555
S L V G +E ++ FS FG + V++ + RT S G+G++ F E
Sbjct: 58 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 110
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 436 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI 537
++ +R +FS G++ V V D TG S+GF +I
Sbjct: 496 KKELRSHFSKCGEVTRVHVPTDRETGASRGFAYI 529
>At4g21930.1 68417.m03172 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584
Length = 183
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 275 GDYAAYASSTSACHHRRRAGRPTDIGVPSHARNRRRLDHDAPI 403
G + A + S RR+ GR +D+ VPS + +R + AP+
Sbjct: 55 GAWNARSLEASGSEWRRKGGRVSDLTVPSDGQRKRHVATSAPV 97
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 31.1 bits (67), Expect = 0.72
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 373 SPPPRPRCSDLIVLGLPWKTTEEAVRDYFSS--FGDLLMVQVKRDTRTGLSKGFGFIKFA 546
SP P L V L WK +R+ F++ F + V D G S G+GF+ FA
Sbjct: 186 SPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFA 244
Query: 547 EYEAQLRAL 573
E A+
Sbjct: 245 TREEAENAI 253
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +1
Query: 400 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 579
++ V L + T+ + FS + +V D +TG S+GFGF+ F + A+
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199
Query: 580 RHMIDGRWCDVR 615
I G+W R
Sbjct: 200 ---ITGKWLGSR 208
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 30.7 bits (66), Expect = 0.95
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +1
Query: 367 AESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA 546
AES P+ + S + V LP T E + + F SFG + ++ + GF+ F
Sbjct: 265 AESIKPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFE 324
Query: 547 EYEA 558
EA
Sbjct: 325 NGEA 328
>At3g32930.1 68416.m04173 expressed protein
Length = 249
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/62 (25%), Positives = 36/62 (58%)
Frame = +1
Query: 49 ELGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGSLLLSTV 228
+LG ++ L+ ++ +K D++ +R VSK + P ++G +P++ +G+ LL +
Sbjct: 112 DLGFSKWLQNIKGNKPDKDAADKRKLVSK---WHPTTKGTLRRNYRIPSKAEGNRLLKAI 168
Query: 229 AA 234
A+
Sbjct: 169 AS 170
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 472 DLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+++ V+V R+ GLS+G+GF++F ++ + L
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 433 TEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
++ + + FS + + +V D TG SKG+GF++F + + +A+
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 472 DLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+++ V+V R+ GLS+G+GF++F ++ + L
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 433 TEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
++ + + FS + + +V D TG SKG+GF++F + + +A+
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 543
+ V GL T+E ++ F+ FG+++ V++ + KG GF++F
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP------VGKGCGFVQF 346
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 487 QVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+V D TG SKG+GF++F + + +A+
Sbjct: 230 KVVLDANTGRSKGYGFVRFGDENERTKAM 258
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 543
+ V GL T+E ++ FS FG+++ V++ + KG GF++F
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP------VGKGCGFVQF 348
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 555
L V GL + E + F FGD+ V+ D + FGF+ F E E
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLERE 65
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +1
Query: 397 SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 573
+ + V LP+ + + F FG + ++ + GL +GF++F E +A RA+
Sbjct: 319 TSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRAI 377
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG-- 576
L V GL + T++ + +F+ G + + + RT +S+GF F+ + + R +
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 577 RRHMIDGR 600
+ +++GR
Sbjct: 134 NQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG-- 576
L V GL + T++ + +F+ G + + + RT +S+GF F+ + + R +
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 577 RRHMIDGR 600
+ +++GR
Sbjct: 133 NQSVLEGR 140
>At1g68150.1 68414.m07785 WRKY family transcription factor similar
to DNA-binding protein ABF2 GI:1159879 from [Avena
fatua]
Length = 374
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 52 LGLNQSLKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGSLL 216
+G++ SLK + +++ +E+EG + S + + G++DE + E+D S L
Sbjct: 27 MGIDLSLK-LEAEEKKKEIEGSKHSRENKEDEEHDASGDEDEQMVKEDEDDSSSL 80
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 436 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF--AEYEAQLRALGRRHMI 591
EE V DYFS+FG + V++ + + FGF+ F E + A G H +
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQQK----RMFGFVTFMYPETVKSILAKGNPHFV 218
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 284 AAYASSTSACHHRRRAGRPTDIGVPSHARNRRRLDHDA 397
A+ +S S H+R RP VP ARN R+ H +
Sbjct: 488 ASSSSVQSRSHNRVSQPRPLASAVPQAARNANRIPHSS 525
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 436 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA--EYEAQLRALGRRHMIDGRWCD 609
EE V +YFS+FG + V++ + + FGF+ F E + A G H + CD
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQQK----RMFGFVTFVYPETVKSILAKGNPHFV----CD 323
Query: 610 VRI 618
R+
Sbjct: 324 SRV 326
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 100 EEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGS 210
+E +G+ +SVS+ E EG +DEP++ + GS
Sbjct: 4540 DEFDGKEYSVSEDEEEDKEDEGSEDEPLDNGIGDVGS 4576
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 433 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQ--LRALGRRHMIDGRWC 606
T+E V +YF +FG + V++ + + FGF+ F E + A G H I C
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQQK----RMFGFVTFLHSETVRIILARGNPHFI----C 382
Query: 607 DVRI 618
D R+
Sbjct: 383 DSRV 386
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 88 DKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGSLLLSTV 228
DK DEEV+G VS +T E+ I ++ GS++L+++
Sbjct: 160 DKDDEEVDGDEEQVSPITFSEGTMGDEESLEITFSGKKKGSIVLASL 206
>At1g27660.1 68414.m03381 ethylene-responsive protein -related
contains similarity to ethylene-inducible ER33 protein
[Lycopersicon esculentum] gi|5669656|gb|AAD46413
Length = 453
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 421 PWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQ 561
P+K +E + D ++ L+ K DT + L + G+IKF + + +
Sbjct: 330 PFKVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQSQIE 376
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTR 507
++V GLP + + ++D+ GD+ QV RD R
Sbjct: 121 VLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDAR 155
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTR 507
++V GLP + + ++D+ GD+ QV RD R
Sbjct: 121 VLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDAR 155
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 403 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTR 507
++V GLP + + ++D+ GD+ QV RD R
Sbjct: 121 VLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDAR 155
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,772,294
Number of Sequences: 28952
Number of extensions: 286512
Number of successful extensions: 1149
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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