Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o19
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     26   5.8  
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.7  

>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 474 LRNKTLRTSKRRKVGPKANGRNTWIT 551
           + ++ L    ++ + PKANG+  W+T
Sbjct: 124 VEDRKLSDDSQKPLAPKANGKEKWVT 149


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 206 NILSVPRKYIIDTGEGMPAYTPRGIRKSALN-SQLSDRVHDVS 331
           N + +PR++  DTG  +  +T       ++N +QL    H ++
Sbjct: 232 NFMGLPREFFTDTGNYVLRFTSTSAANGSVNENQLLQAAHGIA 274


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 543 MCFFHSLSVQPFFFLTSLVSCFLRSI 466
           + F HSL V  FF  +   SC +RS+
Sbjct: 64  LVFLHSLIVARFFVASKSRSCIVRSL 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,864
Number of Sequences: 5004
Number of extensions: 60751
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)