Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o19
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.88 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.2  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 171 VGGSNFGLPISVVKSAVLRVIKGGGWCSLLNYMLIFI 61
           V  S  GL   V  SAVL +     W  L  +MLI I
Sbjct: 404 VAASGPGLAFLVYPSAVLELPGSSIWSCLFFFMLILI 440


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 673 LEHWSRRYLHEPW 635
           L+++  RY+HEPW
Sbjct: 453 LKNFPTRYIHEPW 465


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 107 FITLRTADFTTEMGKPKFDPPTNTFPY 187
           FIT+   DF T   K K D P    P+
Sbjct: 383 FITMFDLDFLTNACKKKDDKPKRRLPH 409


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 171 VGGSNFGLPISVVKSAVLRVIKGGGWCSLLNYMLIFI 61
           V  S  GL   V  SAVL +     W  L  +MLI I
Sbjct: 351 VAVSGPGLAFLVYPSAVLELPGSSIWSCLFFFMLILI 387


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 52  KNKNKDQHVIQ*TTPSTALYNSQN 123
           +N+N+ QHV++ T  +  L N +N
Sbjct: 14  RNRNQLQHVLEETQQALELINLEN 37


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 202 FEHTECP*EVH 234
           F H+ CP E+H
Sbjct: 475 FSHSRCPPEIH 485


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 202 FEHTECP*EVH 234
           F H+ CP E+H
Sbjct: 475 FSHSRCPPEIH 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,578
Number of Sequences: 438
Number of extensions: 4520
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)