Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o19
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47210.2 68414.m05226 cyclin family protein similar to A-type...    28   5.0  
At1g47210.1 68414.m05225 cyclin family protein similar to A-type...    28   5.0  
At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nea...    27   8.7  
At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical...    27   8.7  

>At1g47210.2 68414.m05226 cyclin family protein similar to A-type
           cyclin [Catharanthus roseus] GI:2190259; contains Pfam
           profile PF00134: Cyclin, N-terminal domain
          Length = 372

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 569 PKRDFRPPPAKRGQSKPLEAL-LPRLMQISSR 661
           PKR+ +PPPAK+ +S P+  + L     I SR
Sbjct: 61  PKRNLKPPPAKQIKSAPVAIIDLESKSDIDSR 92


>At1g47210.1 68414.m05225 cyclin family protein similar to A-type
           cyclin [Catharanthus roseus] GI:2190259; contains Pfam
           profile PF00134: Cyclin, N-terminal domain
          Length = 192

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 569 PKRDFRPPPAKRGQSKPLEAL-LPRLMQISSR 661
           PKR+ +PPPAK+ +S P+  + L     I SR
Sbjct: 61  PKRNLKPPPAKQIKSAPVAIIDLESKSDIDSR 92


>At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nearly
           identical to cohesion family protein SYN3 [Arabidopsis
           thaliana] GI:12006362; supporting cDNA
           gi|12006361|gb|AF281155.1|AF281155
          Length = 693

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
 Frame = +2

Query: 98  PPPFITLRTADFTTEMG-----KPKFDPPTNTFPYKIAKRLNILSVP-------RKYIID 241
           PP     RT DFTT+ G       + +P T+T P  +  + N+   P         Y ++
Sbjct: 532 PPRSSPFRTDDFTTQSGNWETESYRTEPSTSTVPEDLPGQRNLGLSPVSERTDEELYFLE 591

Query: 242 TGEGMPAYTPRGIRKSALNSQ 304
            G   P  TP     +AL  +
Sbjct: 592 VGGNSPVGTPASQDSAALTGR 612


>At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical to
           dynamin-like protein 6 (ADL6) [Arabidopsis thaliana]
           GI:6651399; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain, PF00169: PH domain
          Length = 914

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 456 PTV*SILRNKTLRTSKRRKVGPKANGRNTWITSVR*PDRNVTLGHLQLKEAKVNHW 623
           PT    L++   + S + K  P+ +G  T       P+  +T G+L  K AK N W
Sbjct: 539 PTAGGSLKSMKDKPSPQDKETPEVSGLKT-----AGPEGEITAGYLMKKSAKTNGW 589


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,984,523
Number of Sequences: 28952
Number of extensions: 327644
Number of successful extensions: 747
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)