Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o18
         (413 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22886| Best HMM Match : LRR_1 (HMM E-Value=2e-06)                   30   0.87 
SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_4125| Best HMM Match : HLH (HMM E-Value=5.7e-05)                    27   6.1  
SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23)                  27   8.1  
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_45977| Best HMM Match : MBT (HMM E-Value=0)                         27   8.1  

>SB_22886| Best HMM Match : LRR_1 (HMM E-Value=2e-06)
          Length = 583

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = +2

Query: 59  LCNFKILFLIMFTKSQCNHYFKPIVRRLGSYRTKDEYDCYVEGYVKCFWSLCDRHNSIDN 238
           +C  +I F  +F  S   +     +R+L     K E D    GY K   SL   HN   +
Sbjct: 109 ICGTEIPFSELFASSLEGYECTSSLRKLNISHAKGEIDYAALGYFKNLTSLDVSHNMFSD 168

Query: 239 FTEKRNEKSSHN 274
           F  K+    S N
Sbjct: 169 FDLKQISIKSPN 180


>SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1678

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 280  SFVMTTFLIAFFCEVVDAVMSVTETPKT-FNVAFHITIV 167
            S + T   +A+FC +V A + V   P T   VA+  TIV
Sbjct: 1349 SDLSTVLRVAYFCTIVTAAVPVFSDPSTVLRVAYFCTIV 1387


>SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 319 SLCVLQGHSCFRGSFVMTTFLIAFFCEVVDAVMSVTETPKTFNVAFHITIVFV 161
           +LC+L    C R +F   T  +  FCE  D++      P T N+ F  T  F+
Sbjct: 46  TLCILLTELCERLTFYGITANLVPFCE--DSLGFKRPMPSTVNLLFQGTCYFI 96


>SB_4125| Best HMM Match : HLH (HMM E-Value=5.7e-05)
          Length = 218

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/71 (21%), Positives = 32/71 (45%)
 Frame = +2

Query: 50  ISTLCNFKILFLIMFTKSQCNHYFKPIVRRLGSYRTKDEYDCYVEGYVKCFWSLCDRHNS 229
           +  LCNF+ L + +  K++        ++  G  R++ + +  + GY  C   +  R   
Sbjct: 85  VPKLCNFQELQVALMEKAEILETAVQFLKEHGLGRSQTQTNHRLAGYSACAKEVYCRLRM 144

Query: 230 IDNFTEKRNEK 262
           +DN  +   E+
Sbjct: 145 LDNIDDSLRER 155


>SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23)
          Length = 437

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 340 SKNIILKSLCVLQGHSCFRGSFVMTTFLIAFFCEVVD 230
           SK ++L  +C++  H C     + TT     FC+++D
Sbjct: 297 SKKVLLIQICLVSRHFCHEKVSISTT-SFENFCDLID 332


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 182  EGYVKCFWSLCDRHNSIDNFTE 247
            E +++  + LCD H +I+N+TE
Sbjct: 1114 EQHLRYVYKLCDMHLAIENYTE 1135


>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
          Length = 1198

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 195  NVFGVSVTDITA-STTSQKNAMRKVVITKEPRKQEWPCKTHRDFKII 332
            ++ GVS   IT+ STT++      V  T   R++   C T R F  +
Sbjct: 1037 HITGVSTAQITSMSTTTESTTTHPVRRTSRDRRENIKCVTDRLFDAV 1083


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,003,846
Number of Sequences: 59808
Number of extensions: 201956
Number of successful extensions: 521
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)