Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o16
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    72   4e-13
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    52   5e-07
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952...    30   1.6  
09_04_0623 - 19038777-19040561                                         29   2.8  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
 Frame = +1

Query: 190 INRQIQTEQQVAQHYLSLAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLIRGNI 369
           I+ QI  E   +  Y SL   F        G   FF +   EE DH +  +KYQ +RG  
Sbjct: 95  ISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRGGR 154

Query: 370 PNICGIEKP----NLPDNLPLIEAFRYSLKMEEQVNQLLEEIVTEANDIKDYHCADFVTS 537
             +  I  P    + P+    + A   +L +E+ VN+ L  + + A+   D    DFV S
Sbjct: 155 VRLQSIVTPLTEFDHPEKGDALYAMELALALEKLVNEKLHNLHSVASRCNDPQLTDFVES 214

Query: 538 VYLSEQIQSINEINHYIIKLSSFGDDIHAIHNFDTSLIK 654
            +L EQ+++I +I+ Y+ +L   G   H + +FD  L++
Sbjct: 215 EFLEEQVEAIKKISEYVAQLRRVGKG-HGVWHFDQKLLE 252


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 41/148 (27%), Positives = 63/148 (42%)
 Frame = +1

Query: 211 EQQVAQHYLSLAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLIRGNIPNICGIE 390
           E   +  Y SL   F        G   FF +   EE DH +  IKYQ +RG    +  I 
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193

Query: 391 KPNLPDNLPLIEAFRYSLKMEEQVNQLLEEIVTEANDIKDYHCADFVTSVYLSEQIQSIN 570
            P    + P      Y   +      +   +V  A+   D    DFV S +L EQ+++I 
Sbjct: 194 TPLTEFDHPEKGDALYGELLSACPIYVFYSMV--ASRCNDPQLTDFVESEFLEEQVEAIK 251

Query: 571 EINHYIIKLSSFGDDIHAIHNFDTSLIK 654
           +I+ Y+ +L   G   H + +FD  L++
Sbjct: 252 KISEYVAQLRRVGKG-HGVWHFDQKLLE 278


>11_03_0065 -
           9522478-9525335,9525513-9526028,9526432-9527247,
           9527440-9527767
          Length = 1505

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
 Frame = +1

Query: 178 IADLINRQIQTEQQVAQHYLSLAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLI 357
           +  +I  + + E + A+  +S A+TF+  K L     G   +   +  D+   F   +++
Sbjct: 486 LGSMIFEEYKKETEGAEINISQAITFV-FKQLRKICTGIQAQRSMKHSDY--NFCN-KIV 541

Query: 358 RGNIPNICGIEKP--NLPDNLPLIEAFRYSLKMEEQVNQLLEEIVTEANDIKDYHCAD-- 525
           +  IP   G +KP  +L    P  +  RYS K EEQ   L+ + V E   + D    D  
Sbjct: 542 Q--IPLSYGEDKPRNHLSRTCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDE 599

Query: 526 FVTSVYLSEQIQSINE 573
            + S+  ++++++INE
Sbjct: 600 SIYSIIETDEVETINE 615


>09_04_0623 - 19038777-19040561
          Length = 594

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 181 ADLINRQIQTEQQVAQHYLSLAVTFLNVKSLYHGAGGFFMKMYFEELDHMQ 333
           A+    ++Q E Q+AQ  LS   + ++ + LY G    F ++   +++HM+
Sbjct: 173 AEAAKARLQKEAQLAQSVLSRYGSDVSFRFLYDGVADTFAELLKSDVEHMR 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,468,919
Number of Sequences: 37544
Number of extensions: 252107
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)