Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o15
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.49 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.49 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.49 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.49 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.1  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   1.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   6.0  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    21   8.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.0  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 330 PAQNEIDIVNARFRNGDPVYKHPMIPGY 413
           P    + I     RNGDP + H  IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 330 PAQNEIDIVNARFRNGDPVYKHPMIPGY 413
           P    + I     RNGDP + H  IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 330 PAQNEIDIVNARFRNGDPVYKHPMIPGY 413
           P    + I     RNGDP + H  IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 330 PAQNEIDIVNARFRNGDPVYKHPMIPGY 413
           P    + I     RNGDP + H  IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 338 ERDRHRERTFP*WRSRLQASHDTRIRRISAPSERTLRPKIYRVSYG 475
           ER  H +  +P W SR  A+   + +R   P++     K  R  YG
Sbjct: 535 ERQLHMQ-LYPDWSSRANATRGKKRKRKQDPADGGNSMKKCRARYG 579


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 338 ERDRHRERTFP*WRSRLQASHDTRIRRISAPSERTLRPKIYRVSYG 475
           ER  H +  +P W SR  A+   + +R   P++     K  R  YG
Sbjct: 427 ERQLHMQ-LYPDWSSRANATRGKKRKRKQDPADGGNSMKKCRARYG 471


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 130 NFKKKYFWPNSY 95
           + K++Y+WPN Y
Sbjct: 151 SMKREYYWPNMY 162


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 252 GSCVLSSHTYRRSDTCTRDNDPCT 181
           G C   +  YR+    T  ++PCT
Sbjct: 671 GDCFYENKFYRQEAQWTSSDNPCT 694


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 538 GSSVFRPEKDSPGIWL 585
           G  +FR   D+PG WL
Sbjct: 653 GYVIFRFRADNPGYWL 668


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +3

Query: 219 GDTYGSTTHKILLDPSVQHSERLVLSDRTADDFQI 323
           GD Y S   K LLD    H + LV +   A    I
Sbjct: 441 GDRYQSEREKALLDFKTGHRKVLVATGVAARGLDI 475


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 267 VQHSERLVLSDRTADDFQIY 326
           V+H   L LS++ A DF  Y
Sbjct: 46  VKHFHPLALSNKNAIDFNYY 65


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 695 CWRQFRLVHW 666
           CW QF+ V W
Sbjct: 393 CWAQFKAVLW 402


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 695 CWRQFRLVHW 666
           CW QF+ V W
Sbjct: 393 CWAQFKAVLW 402


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 644 TFRSYYDQGQLKLRRSRESVNQIPGLSFSGLK 549
           TF+       L L  + +   +I GLSF GL+
Sbjct: 413 TFKGIPRLASLNLGHNSQLTLEINGLSFQGLE 444


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,371
Number of Sequences: 336
Number of extensions: 4281
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)