Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o15
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.94 
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   2.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   6.6  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   8.7  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    25   8.7  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   8.7  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   8.7  

>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +3

Query: 351 IVNARFRNGDPVYKHPMIPGYEGFLPRLNAHFGQRYTVSATEALSEFQ-RLQLNQRAARN 527
           IVN    +  P   HP    YE  LP       +++ +  +E     Q +L  N   A+N
Sbjct: 106 IVNRMLADYLPDSSHPDYQAYEKALPEYKKSIEEKFPIVCSECYDSVQDQLDANDYEAKN 165

Query: 528 QL 533
           Q+
Sbjct: 166 QV 167


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 579 LVDRFSATAEFKLPLVVVRPECAGILRDLPMDEPKLSPASHSVSPYFMEND 731
           L  +F+ +A ++  +V  +PE    +++     PK+  A  S++P   E+D
Sbjct: 350 LTQQFALSAPYESCIVTKKPEPCITVKEEEQLAPKIESADLSITPQVTEHD 400


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -2

Query: 414  RILVSWDACKRDRHYGNVRSRCLSRSVLDGRSGSHRPFYRIA-----PASLNAAR 265
            +IL+  +  +  + YGN  +  LSR   D +SG +    ++A     PAS N A+
Sbjct: 2653 KILIGKELLRHGQEYGNSITNDLSRLCADVKSGKNESELQVALAPFCPASSNQAK 2707


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 277 QRGW-CYPIERPMTSRSTVQHRTR 345
           ++GW CYP  R    RS  + RTR
Sbjct: 144 EKGWLCYPCSRGAEDRSVPELRTR 167


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 165 PHYIPGYTGHCPEYKYRIGDTYGST 239
           P YIPG+T      ++  GD Y ST
Sbjct: 128 PKYIPGWTNPICIGRHAFGDQYKST 152


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 431 TGQKSFVSW-YHGM-LVNGIAITETCVHD 351
           TG +SF+   Y G  L+NGI + E+CV +
Sbjct: 309 TGVESFIPMEYTGTHLINGIPLNESCVRN 337


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 524 PSCPLVQLQPLKLGECFRS*HGISLAEVCVQTGQ 423
           P CP+ Q +PL L +C+     ++L ++  +  Q
Sbjct: 169 PMCPIEQDKPLSLEQCWIGTEDMTLPDIDTENPQ 202


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 544 SVFRPEKDSPGIWLTDSLLRRSL 612
           +VFRPE   P IW+   L R  L
Sbjct: 36  NVFRPENGRPPIWVQRRLKRSDL 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,312,639
Number of Sequences: 5004
Number of extensions: 73446
Number of successful extensions: 236
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)