Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o15
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)            109   2e-24
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)               51   9e-07
SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.015
SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)                   28   7.0  
SB_35786| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_30216| Best HMM Match : TIL (HMM E-Value=3.1)                       28   9.3  
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)
          Length = 332

 Score =  109 bits (262), Expect = 2e-24
 Identities = 67/196 (34%), Positives = 106/196 (54%), Gaps = 3/196 (1%)
 Frame = +3

Query: 165 PHYIPGYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSERLVLSDRTADDFQIYRPAQNE 344
           P++IPGY G+CP++KY+IG+T+G TT  +L D SV +S + VLSD    + Q+   A   
Sbjct: 47  PYHIPGYCGYCPQFKYQIGETFGRTTSCLLTDNSVAYSGKPVLSD---IEPQVPPKADTR 103

Query: 345 ID-IVNARFRNGDPVYKHPMIPGYEGFLPRLNAHFGQRYTVSATEALSEFQRLQLNQRAA 521
            D I N     GD      M+PGY G++P+   ++G  Y  ++  A+++F + QL  R  
Sbjct: 104 RDTIKNRAISLGDQKLTDQMVPGYTGYIPKAEHYYGNSYAETSRSAIADFHQNQLKHRQK 163

Query: 522 RNQLERVVSLQAGKGQPWDLVDRFSAT-AEFKLPLVVVRPECAGILRDLP-MDEPKLSPA 695
              L  +  +Q GK    +L+   + T ++F++PL  +         D P M   K +P 
Sbjct: 164 AINLRTITEIQRGKQVLPELITSDTRTLSKFQVPLKAI--------ADKPKMYYSKKAP- 214

Query: 696 SHSVSPYFMENDDPDK 743
            HS+SP  + ND+P K
Sbjct: 215 QHSLSPLALSNDNPKK 230



 Score = 31.9 bits (69), Expect = 0.57
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 35/153 (22%)
 Frame = +3

Query: 174 IPGYTGHCPEYKYRIGDTYGSTTHKILLD---PSVQHSER-------------------L 287
           +PGYTG+ P+ ++  G++Y  T+   + D     ++H ++                   L
Sbjct: 124 VPGYTGYIPKAEHYYGNSYAETSRSAIADFHQNQLKHRQKAINLRTITEIQRGKQVLPEL 183

Query: 288 VLSD-RTADDFQI------------YRPAQNEIDIVNARFRNGDPVYKHPMIPGYEGFLP 428
           + SD RT   FQ+            Y     +  +      N +P   H    GY GF+P
Sbjct: 184 ITSDTRTLSKFQVPLKAIADKPKMYYSKKAPQHSLSPLALSNDNPKKHHKS--GYSGFVP 241

Query: 429 RLNAHFGQRYTVSATEALSEFQRLQLNQRAARN 527
           R     G+ Y V   +AL  F     N +  ++
Sbjct: 242 RYRGLMGEGYPVLTNKALIAFSSNMENMKKIKD 274



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
 Frame = +3

Query: 168 HYIPGYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSERLVLSDRTADDFQIYRPAQNEI 347
           H+  GY+G  P Y+  +G+ Y   T+K L+  S        + D       I RP   E+
Sbjct: 231 HHKSGYSGFVPRYRGLMGEGYPVLTNKALIAFSSNMENMKKIKDLPV---TIERP---EV 284

Query: 348 DIVNARFRNGDPVY---KHPMIPGYEGFLPRLNAHFGQRYTVSATEA 479
            +V+ R     P+Y      ++P + G +P     +G  +  S   A
Sbjct: 285 RLVDTR-----PIYPKNNTGLVPHFTGHVPGEKFRYGMTFGYSTRYA 326


>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
          Length = 834

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
 Frame = +3

Query: 180 GYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSERLVLSDRTAD--DFQIYRPAQNEIDI 353
           GY G+CP+ KY  G TYG  T K  L      +E+L+ + R  D  + + + P  N ++ 
Sbjct: 634 GYRGYCPQLKYECGHTYGIATDK--LTTRHMRNEKLI-TTRLPDPKEREQFLPQPNGVNK 690

Query: 354 VNARFRNGDPVYKHPMIPGYEGFLPRLNAHFGQRYTVSATEALSEFQRLQLNQRAARNQL 533
           + A            M  GY G++P +   +G RY  +  +A+S+F +     R   + L
Sbjct: 691 LTAN-----------MKLGYTGYIPTMRYLYGSRYREATDQAISDFMQKDEKYRNESDDL 739

Query: 534 ERVV 545
           ++ V
Sbjct: 740 KKTV 743



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 14/107 (13%)
 Frame = +3

Query: 180  GYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSERLVLSDRTADDFQIYRPAQNEID--- 350
            GYTG+ P  +Y  G  Y   T + + D   +  +    SD         +  Q   D   
Sbjct: 698  GYTGYIPTMRYLYGSRYREATDQAISDFMQKDEKYRNESDDLKKTVYSTKKLQPRADHKE 757

Query: 351  ---IVNARFRNGDPVY--KH-----PMIPGYEGFLPRLNAH-FGQRY 458
                 + R R G   +  +H       +PGY G++PR  AH  G RY
Sbjct: 758  PSMYPDLRPRYGKDYFPSEHREFTEAPLPGYTGYVPRRRAHDLGMRY 804


>SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +3

Query: 171 YIPGYTGHCPEYKYRIGDTYGSTTHKILLDP-SVQHSERLVLSDRTADDFQIYRPAQNEI 347
           ++PGY G  P+ ++R GDT+G+ T K   D  + Q       +  T  D +I  P     
Sbjct: 19  HLPGYAGFRPQQQWRYGDTFGNDTAKYFQDKRTAQLKRSTAQAPGTEWDAKIAFPTVYSN 78

Query: 348 D---IVNARFRNGDPVYKHP 398
           D   +V AR R  D     P
Sbjct: 79  DPKLVVGARTRERDRWLSRP 98


>SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)
          Length = 274

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 161 PTALYSWVHGSLSRVQVS 214
           P A Y W HG+LSR++ S
Sbjct: 103 PLAHYPWFHGTLSRIEAS 120


>SB_35786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 645 AGILRDLPMDEPKLSPASHSVSPYFMENDDPDKFI 749
           A I+  L MD+  L  ++  V   F+  DDP+K +
Sbjct: 54  AAIMSSLKMDDSSLKMSATHVKDLFIRVDDPEKHV 88


>SB_30216| Best HMM Match : TIL (HMM E-Value=3.1)
          Length = 212

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 393 ACKRDRHYGNVRSRCLSRSVLDGRSGSHRPFYRIAPASLNAARSDR 256
           +C  D+H+   R  C+S+ ++DG   S     R  P      RS R
Sbjct: 148 SCPMDKHHVETREACVSKGLIDGCVSSAFGSGREEPVQGAFCRSSR 193


>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 324  RSGSHRPFYRIAPASLNAARSDREGSCVLSSHTYRRSDTCT 202
            R+ S     R    +L++    R  +C LSSHT  R  TCT
Sbjct: 1016 RTLSSHTLSRPVTRTLSSHTLSRHVTCTLSSHTLSRHVTCT 1056


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,985,165
Number of Sequences: 59808
Number of extensions: 578888
Number of successful extensions: 1529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)