Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o15
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24360.1 68418.m02872 protein kinase family protein / Ire1 ho...    31   0.62 
At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase fa...    31   0.82 
At4g21230.1 68417.m03070 protein kinase family protein contains ...    28   7.6  
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    28   7.6  
At1g44900.1 68414.m05144 DNA replication licensing factor, putat...    28   7.6  

>At5g24360.1 68418.m02872 protein kinase family protein / Ire1
           homolog-1 (IRE1-1) identical to Ire1 homolog-1
           [Arabidopsis thaliana] GI:15277137; cDNA Ire1 homolog-1
           GI:15277136;
          Length = 881

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 21/52 (40%), Positives = 28/52 (53%)
 Frame = -3

Query: 629 YDQGQLKLRRSRESVNQIPGLSFSGLKTDDPLQLVPSCPLVQLQPLKLGECF 474
           Y + + KL+ + ESV  I GLS S  K   PL    S P+VQL+ +K    F
Sbjct: 235 YAKMEAKLQ-NHESVQFISGLSSSVGKNQFPLSYTTSVPMVQLRNVKYETLF 285


>At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase
           family protein similar to SP|P32019 Type II
           inositol-1,4,5-trisphosphate 5-phosphatase  precursor
           (EC 3.1.3.56) {Homo sapiens}; contains Pfam profile
           PF03372: Endonuclease/Exonuclease/phosphatase family
          Length = 334

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +3

Query: 171 YIPGYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSERLVLSDRTADDFQIYRPAQNEID 350
           Y  G  G  P YKY +G +   T+HKI + P+   ++R++   +  D+ Q    + + ID
Sbjct: 257 YSEGTLGFKPTYKYNVGSSDYDTSHKIRV-PA--WTDRILFKIQDTDNIQATLHSYDSID 313

Query: 351 IV 356
            V
Sbjct: 314 QV 315


>At4g21230.1 68417.m03070 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 642

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 312 DFQIYRPAQNEIDIVNARFRNG-DPVYKHPMIPGYEGFLPRLNAHFGQRYTVSATEAL 482
           DF+  R A ++  + N     G   VYK  +  G E  + RL+ H GQ      TE L
Sbjct: 322 DFETIRVATDDFSLTNKIGEGGFGVVYKGHLPDGLEIAVKRLSIHSGQGNAEFKTEVL 379


>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 208 SIGSAIRMARQHTRSFSIRACSIQRGW 288
           SIGSA R  RQ T++ S+R    Q  W
Sbjct: 234 SIGSACRRLRQLTKNESVRKMVCQNAW 260


>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
           similar to DNA replication licensing factor MCM2 from
           {Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 928

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 288 VLSDRTADDFQIYRPAQNEIDIVNARFRNGDPVYKHPMIPG 410
           +L D  +DD+  YRP++     V  R   GDP    P  PG
Sbjct: 130 LLHDNDSDDWN-YRPSKRSRTTVPPRGNGGDPDGNPPSSPG 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,270,775
Number of Sequences: 28952
Number of extensions: 383864
Number of successful extensions: 944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)