Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o14
         (577 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O13870 Cluster: CCR4-Not complex subunit Not3/5; n=1; S...    33   4.8  
UniRef50_A5GSA4 Cluster: Ribosome recycling factor; n=6; cellula...    33   6.4  
UniRef50_A5KAU2 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  

>UniRef50_O13870 Cluster: CCR4-Not complex subunit Not3/5; n=1;
           Schizosaccharomyces pombe|Rep: CCR4-Not complex subunit
           Not3/5 - Schizosaccharomyces pombe (Fission yeast)
          Length = 630

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 275 KMRPEEIESISKRLENGEISEDNSTDNEDDINYY 174
           K   +++E I +RLEN +IS +   D ++DI YY
Sbjct: 166 KWHQDKLELIMRRLENSQISPEAVNDIQEDIMYY 199


>UniRef50_A5GSA4 Cluster: Ribosome recycling factor; n=6; cellular
           organisms|Rep: Ribosome recycling factor - Synechococcus
           sp. (strain RCC307)
          Length = 179

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 281 LSKMRPEEIESISKRLENGEISEDNSTDNEDDI 183
           L  +R + I+ I KR ++GE+SED S D +D +
Sbjct: 122 LRNVRRDAIDQIKKREKDGELSEDLSRDEQDKV 154


>UniRef50_A5KAU2 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 501

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 77  LLQADLHPSLGQWENYLYPLHLLAPSDDLFGSNNSLCHL 193
           L +  L P L  WENY+Y     +P D+LF + N+L +L
Sbjct: 62  LTEITLSPLLNIWENYIY--EKASPEDELFFNENTLEYL 98


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,265,484
Number of Sequences: 1657284
Number of extensions: 7421209
Number of successful extensions: 19814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19778
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)