Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o10
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    27   1.5  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   4.6  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   6.1  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   6.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.0  

>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 19  NFTSITTATATKFQDILLGTVTTPLYVLTTDYQSYSLAYSCVN 147
           N  S   A  T FQD+     +T L+ L T++ SYS+  +  N
Sbjct: 112 NCESDFVAQTTPFQDLARRIASTFLHYLPTNHSSYSVEATLKN 154


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 147 HQQFPESRWCMETQ*NPNNAC 209
           H+  PE+RWC E+  N    C
Sbjct: 278 HEMEPENRWCCESLVNYEALC 298


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 146 TSTISREPLVHGNS--VEPEQCLQQEQRLSTLTWHKEKNSTNLYS 274
           T TIS +PL+H N+   +P Q    +   +T        +TN YS
Sbjct: 87  TLTISSQPLIHTNTSISKPSQTATPQNTNTTQVSLTNGTTTNSYS 131


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 189 TEFPCTNGSLEIVDVYTAIGQ*VALVIRRENVE 91
           T FPC N +  +     A+ + VA  IR  NVE
Sbjct: 531 TVFPCENSTSHLEVEEAAMDETVAFQIRGNNVE 563


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 131  PIAV*TSTISREPLVHGNSVEPEQCLQQEQRLSTLTWHKEKNSTNLYSFRWNKMKTVKN 307
            P+   T +IS   +V   S       QQEQ L+ +   KE+ +  +  FR  + K ++N
Sbjct: 1092 PVYAETLSISSSKIVQSLS----DAEQQEQHLAKVRMAKERQARIMEQFRMQQNKFLEN 1146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,775,221
Number of Sequences: 5004
Number of extensions: 33337
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)