Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o10
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0281 + 16744690-16744727,16744744-16745611,16746195-167467...    32   0.28 
03_06_0474 - 34184002-34184660,34184755-34184887,34185071-341858...    29   2.6  
02_05_1094 + 34060262-34060385,34061256-34061428,34061505-340616...    27   6.0  
01_06_1669 - 39004756-39004801,39004855-39004902,39005207-390053...    27   6.0  
01_01_0033 + 260562-260661,260895-260941,261582-261681,261925-26...    27   6.0  

>12_02_0281 +
           16744690-16744727,16744744-16745611,16746195-16746725,
           16747737-16748549
          Length = 749

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +1

Query: 190 RTRT--MPAAGTTAIDAYMAQREELHQPIFIQ--VEQNENCEEPNSAFLARSSILVMIVC 357
           RTR+  M AAG  +I  Y A+R +    +F +     ++   +P  AFL R + L ++ C
Sbjct: 73  RTRSVRMAAAGVMSIGGYRAERLKSIGRVFQEDLTNMSQKIFDPQDAFLVRMNRLFVMAC 132

Query: 358 VI 363
           ++
Sbjct: 133 IV 134


>03_06_0474 -
           34184002-34184660,34184755-34184887,34185071-34185886,
           34186013-34186104,34186710-34186863
          Length = 617

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +1

Query: 103 TTDYQSYSLAYSCVNINNFQRAVGAWKLSRTRTMPAAGTTAIDAYMAQREELHQPIFIQV 282
           T+D   +S++ SC+++N+       WK++  +   A        Y+   +EL QP  + V
Sbjct: 329 TSDSSDHSMSSSCLSVND------RWKMTFKKVHCALAANLDSMYVTNHKELEQPSPVSV 382


>02_05_1094 +
           34060262-34060385,34061256-34061428,34061505-34061686,
           34061789-34062073,34062160-34062218,34062349-34062385,
           34062485-34062556,34063613-34063937,34064027-34064410
          Length = 546

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +1

Query: 88  PLYVLTTDYQSYSLA----YSCVNINNFQRAVGAWKLSRTRTMPAAGTTAIDAYM 240
           P+ V  T   S+ LA    Y    +N F++  G W +S    M + G TA   ++
Sbjct: 56  PVDVNVTTNSSFVLAQERTYRKDPLNGFRKYTGGWNISEVHYMASVGYTAFPLFI 110


>01_06_1669 -
           39004756-39004801,39004855-39004902,39005207-39005349,
           39007093-39007116
          Length = 86

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 166 AVGAWKLSRTRTMPAAGTTAIDAYMAQREELHQ 264
           AVG+WK+ RTR   + G   I     +RE+L++
Sbjct: 18  AVGSWKVERTRPWQSTGVEKI-LNFGRREQLNK 49


>01_01_0033 +
           260562-260661,260895-260941,261582-261681,261925-262181,
           262525-262640,263014-263098,264236-264415,264740-264817,
           264909-264970,265138-265246,266237-266514,266591-266657,
           266734-266802,266880-266981,267309-267443
          Length = 594

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
 Frame = +1

Query: 160 QRAVGAWKLSRTRTMPAAGTTA-----IDAYMAQREELHQPIF 273
           ++  G WK   T   P    +A     IDAYM   ++L  P+F
Sbjct: 4   EKGKGKWKRPPTVKPPVMAASASDDDEIDAYMESEDDLEHPVF 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,124,360
Number of Sequences: 37544
Number of extensions: 207548
Number of successful extensions: 474
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)