Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o10
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56052| Best HMM Match : Mpv17_PMP22 (HMM E-Value=2.7)               29   2.7  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.6  
SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)               28   4.7  
SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_8673| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-38)                  27   6.2  
SB_39180| Best HMM Match : Herpes_LP (HMM E-Value=7.7)                 27   8.2  

>SB_56052| Best HMM Match : Mpv17_PMP22 (HMM E-Value=2.7)
          Length = 215

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 93  ERRGHGS*KYILKFSRCCSSNTCEVV 16
           +   +GS  Y +K+ + C S+TCEVV
Sbjct: 107 DEMANGSILYFVKYKKPCRSSTCEVV 132


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 164 EPLVHGNSVEPEQCLQQEQRLSTLTWHKEKNSTNLYSFRWNKMKTVKNRT 313
           EPL +G   +P   +        L W  +   T  Y +RWN +    NRT
Sbjct: 362 EPLTYGQYTDPLGYIYTIADKQYLRWANDSMKT--YEWRWNHVNPKTNRT 409


>SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)
          Length = 1364

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 61   DILLGTVTTPLYVLTTDYQSYSLAYSCVNINNFQRAVG 174
            DI+LG +T P Y  TT +Q+  +     N+ ++ R  G
Sbjct: 992  DIILGNITGPYYAQTTLFQNKLVNPGLNNLRSYIRVDG 1029


>SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 111 IRRENVERRGHGS*KYILKFSRCCSSNTC 25
           +R++ +E       K++L   RCCSSN C
Sbjct: 9   VRKDPIEMVHTKFLKWLLGVKRCCSSNAC 37


>SB_8673| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-38)
          Length = 719

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 170 LVHGNSVEPEQCLQQEQRLS-TLTWHKEKNSTNLYS 274
           L+HG S E E C+ ++ R +  LT    +NS NL+S
Sbjct: 301 LIHGGSGEHE-CISEDDRSTHLLTGRYAENSANLFS 335


>SB_39180| Best HMM Match : Herpes_LP (HMM E-Value=7.7)
          Length = 268

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 102 HDGLPELLTGL*LCKHQQFPESRWCMETQ*NPNNACSRNNGYRRLHGTKRRTPP 263
           +D  P     +   K Q+    R  +E + NP+   + N G RR    KRR  P
Sbjct: 209 NDAAPNGCYSVRAIKPQRNHTYRSAVEIEVNPSKTATTNRGERRRRSQKRRQVP 262


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,891,677
Number of Sequences: 59808
Number of extensions: 239678
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)