Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o10
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    28   4.1  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    28   4.1  
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF125451-6|AAD12825.1|  554|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +3

Query: 3   SSRPRQ---LHKYYYCNSD*ISRY--TSRNRDHASLRSHDGLPELL 125
           SS PR    ++  YY   D +S Y      R   SL SH  +PEL+
Sbjct: 354 SSEPRSETYINDPYYSGKDVVSGYGVIETRRSRTSLHSHGSVPELI 399


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +3

Query: 3   SSRPRQ---LHKYYYCNSD*ISRY--TSRNRDHASLRSHDGLPELL 125
           SS PR    ++  YY   D +S Y      R   SL SH  +PEL+
Sbjct: 576 SSEPRSETYINDPYYSGKDVVSGYGVIETRRSRTSLHSHGSVPELI 621


>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical protein
            R09H10.5 protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 38   LQQRLNFKIYF*-EP*PRLSTFSRRITRATH-WPIAV*TSTISREPLVHGNSVE 193
            + +R  F  Y    P P    FSR +T ATH  P+   +ST+  +P +   S +
Sbjct: 961  ITERSQFSAYLGFSPDPSFDRFSRDLTYATHQQPVIHLSSTLQSDPSIDVTSYD 1014


>AF125451-6|AAD12825.1|  554|Caenorhabditis elegans Hypothetical
           protein Y37E11B.5 protein.
          Length = 554

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 187 SRTRTMPAAGTTAIDAYMAQREELHQPIFIQVEQNENCEEPNSAFLARSSILVMIVC 357
           +R + M  A T    A +     + QP+  +  +  NCE   SAFLA+    + + C
Sbjct: 47  TRRKDMKHAETRIRAAAVRLCPSVIQPVACKFGEKCNCEHDISAFLAKKPADIGVAC 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,845,678
Number of Sequences: 27780
Number of extensions: 188622
Number of successful extensions: 432
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)