Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o07
         (318 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    20   6.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   6.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     20   8.3  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 203 VNRGHCKSIGVSNKKM 250
           ++RGHC  IG   K++
Sbjct: 41  LDRGHCDVIGKKIKEL 56


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -1

Query: 258 IKHIFLLETPMLLQWPRLTYIIWNYSHLCSDTG 160
           ++ +FL   P LL   R  Y    Y     D+G
Sbjct: 350 VRQVFLNWMPRLLMMRRTPYSTPEYDDTYMDSG 382


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 51  NFNNLIQFKTSNL 89
           N NN+  FK SN+
Sbjct: 159 NGNNITNFKNSNI 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,152
Number of Sequences: 438
Number of extensions: 1278
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)