Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10o06
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 3.2
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 26 4.2
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 26 4.2
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 5.6
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 25 5.6
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 7.4
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.4
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo... 25 7.4
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 7.4
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 25 7.4
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +3
Query: 303 FPKLKLIATILSVPPQIHMLVLLHRSVAARIENETLTKAIRAYSGLTLASTVWTVVSLMR 482
+ LKL+ + SV P + + +L R +++T +++ SGL+ A + ++
Sbjct: 140 YENLKLLKFLSSVGPHVRVSQMLAR--------DSVTTRLQSPSGLSFAELTYQLLQAYD 191
Query: 483 Y*YIY 497
Y Y+Y
Sbjct: 192 YSYLY 196
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 4 YQSKCQLTNVQNA*LKKLNKNEMEIIQKTRSKCVKYQHWL 123
Y S+ QL ++ L LN+ E+ I + RSK + W+
Sbjct: 149 YDSQHQLCIEEDRTLAYLNRQELAIPKTLRSKSIPQHSWV 188
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 86 RLDRNV*NINIGSLHLRSNNIQTVMVHSYG 175
+LD V N + SLHLRS+ +QT + H G
Sbjct: 245 QLDGKV-NPLVTSLHLRSSALQTALFHPDG 273
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 378 SVAARIENETLTKAIRAYSGLTLASTVWTVVSLMRY 485
S++A + +TL + + A L+STVW++ L+ Y
Sbjct: 544 SISASVGMKTLFEDLMAEKSRGLSSTVWSLQLLLCY 579
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 203 DDITPVDQSSHTNEP 159
+D+ PVD SH NEP
Sbjct: 286 EDLDPVDSISHMNEP 300
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 504 HSHIYINIASKTQPSTLLMLKSIRYTLVLPSLKFR 400
H I+++SK+ LL + ++YTL LPS +FR
Sbjct: 187 HKPKKISLSSKSTLEDLL--EGVKYTLSLPSDQFR 219
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +3
Query: 291 PTRMFPKLKLIATILSVPPQI---HMLVLLH 374
P FP LK+ T +PP++ +M+++LH
Sbjct: 512 PPHFFPVLKMFLTNEHLPPKLSPWNMMIVLH 542
>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 360
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 165 IRMGTLIHWSYIIGSAIYPKNTNGCIALSGSCFAFVIIGSVLPTR 299
I GT+I + IGSA Y TNG + + + +G +L R
Sbjct: 182 IGRGTMILLNDRIGSAFYTTKTNGNMLDTFKSYEAGFLGMILDQR 226
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 297 RMFPKLKLIATILSVPPQIHMLVLL 371
R F KLKL +++VP + M++L+
Sbjct: 557 RSFTKLKLFILLIAVPFALPMIILI 581
>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 360
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 165 IRMGTLIHWSYIIGSAIYPKNTNGCIALSGSCFAFVIIGSVLPTR 299
I GT+I + IGSA Y TNG + + + +G +L R
Sbjct: 182 IGRGTMILLNDRIGSAFYTTKTNGNMLDTFKSYEAGFLGMILDQR 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,244
Number of Sequences: 5004
Number of extensions: 47218
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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