Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o06
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0092 - 1119203-1119502,1119612-1120412                           29   3.3  
08_02_0536 - 18302394-18302826,18302903-18303183,18303480-183037...    29   3.3  
05_05_0082 + 22252993-22255617                                         28   4.3  
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842     28   4.3  
03_06_0678 - 35480711-35484658                                         28   5.7  

>10_01_0092 - 1119203-1119502,1119612-1120412
          Length = 366

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -1

Query: 469 TTVHTVDAKVNPLYARIAFVKVSFSIRAATLLCSSTNM*ICGGTLSIVAISFNLG 305
           +T   + A++   +   AF+K S ++RAAT LC S  +   GG  ++  ++ N+G
Sbjct: 14  STDDLIQAEIELYHHCFAFIK-STALRAATDLCISDAIHRNGGAATLSDLALNIG 67


>08_02_0536 -
           18302394-18302826,18302903-18303183,18303480-18303747,
           18303959-18303996,18304459-18304761
          Length = 440

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 105 KISTLALFICGPIIYKLLWF--IRMGTLIHWSYIIGSAI 215
           +  TLAL I   ++   LWF  + +GT ++W+ + GS I
Sbjct: 395 RYETLALLIFSSVLAVDLWFWELLVGTAVNWASLAGSWI 433


>05_05_0082 + 22252993-22255617
          Length = 874

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +3

Query: 180 LIHWSYIIGSAIYPKNTNGCIALSGSCFAFVIIGSVLPTRMFPKLKLIATILSVPPQIHM 359
           ++ W+ II   I     NG I L+   F+ +    V+P        L A++  +PPQIH 
Sbjct: 369 VVSWTAIISGCIQ----NGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHA 424

Query: 360 LVL 368
            V+
Sbjct: 425 QVI 427


>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
          Length = 355

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 102 CKISTLALFICGPIIYKLLWFIRMGTLIHWSYIIGSAIYPKNTNGCIAL 248
           C++  L + ICGP I K+L     G  IH S +  S +Y ++  G +++
Sbjct: 99  CQVGLLDIDICGPSIPKMLGL--EGQDIHQSNLGWSPVYVESNLGVMSI 145


>03_06_0678 - 35480711-35484658
          Length = 1315

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = -1

Query: 298 RVGRTLPMITNAKQLPLNAMHPLVFLGYIAEPMI*LQWIKVPIRMNHNSLYIIGPQMKRA 119
           R+G  L MI NA ++ +  M+   F      PM  ++W K   ++++ S+ I     K+ 
Sbjct: 119 RMGNKLRMILNAIEVLIAEMNAFRFKFRPEPPMSSIKWRKTDSKISNLSMDIANKSRKKD 178

Query: 118 NVDILH 101
             +I++
Sbjct: 179 KEEIVN 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,589,965
Number of Sequences: 37544
Number of extensions: 276286
Number of successful extensions: 566
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)