Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o06
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  29   3.3  
SB_16169| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_45713| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_9440| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_50525| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +2

Query: 233  RMHCIERELFCIRDHRECSSDAYV---S*IKTNRYNTKCAPTNSHVGTTA--*ECGGSNR 397
            R+ C+   + C++D+  CS DA       +   +Y+  C  +N     T+   +C G+N 
Sbjct: 988  RVACLNDNVMCLKDNVMCSKDAVTCQNRSVTCPKYSVLCPDSNVEPNETSVNDKCNGAN- 1046

Query: 398  KRNFNEGNTSV*R 436
              + ++ NTS  R
Sbjct: 1047 --DSSDDNTSAVR 1057


>SB_16169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 148 YIIGPQMKRANVDILHISIESFV*FPFH 65
           YI+GP+M+       H SIE FV F  H
Sbjct: 138 YIVGPEMQDIEYIRSHYSIEDFVYFNHH 165


>SB_45713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 702

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 128 HLRSNNIQTVMVHSYGNFDPLELYHRL 208
           H  +NN+Q++++ S   +DP++ +H L
Sbjct: 556 HWTTNNLQSLLLPSTNTYDPVDNFHTL 582


>SB_9440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 150 KLLWFIRMGTLIHWSYIIGSAIYPKNTNGC 239
           KL W+  +  L+    IIG+ I+PKN + C
Sbjct: 45  KLEWWNFLSLLLSMGMIIGAEIFPKNGDIC 74


>SB_50525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +3

Query: 69  NGNYTKDSIEMCKISTLALFICGPIIYKLLWFIRMGTLIHWSYIIGSAIYPKNTNGCIAL 248
           NG  T + +E C   T  L  C P +YKL+  +    L+    II    Y +    C  L
Sbjct: 48  NGRVTVEQVEPCTGKTKPLIPCTP-VYKLIHNLHPYDLV--LDIIDP--YYQPLKPCTPL 102

Query: 249 SGSCFA 266
           + SC+A
Sbjct: 103 TNSCYA 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,171,403
Number of Sequences: 59808
Number of extensions: 333133
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)