Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10o06
(553 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC110058-1|AAI10059.1| 518|Homo sapiens leucine rich repeat tra... 30 4.7
BC099738-1|AAH99738.1| 518|Homo sapiens leucine rich repeat tra... 30 4.7
BC098301-1|AAH98301.1| 519|Homo sapiens LRRTM4 protein protein. 30 4.7
BC098267-1|AAH98267.1| 519|Homo sapiens LRRTM4 protein protein. 30 4.7
AY358324-1|AAQ88690.1| 590|Homo sapiens GFHL3075 protein. 30 4.7
AY182030-1|AAO67551.1| 518|Homo sapiens leucine-rich repeat tra... 30 4.7
AK126961-1|BAC86764.1| 518|Homo sapiens protein ( Homo sapiens ... 30 4.7
BC113717-1|AAI13718.1| 581|Homo sapiens leucine rich repeat tra... 29 8.2
BC113715-1|AAI13716.1| 581|Homo sapiens leucine rich repeat tra... 29 8.2
BC111492-1|AAI11493.1| 581|Homo sapiens leucine rich repeat tra... 29 8.2
AY358315-1|AAQ88681.1| 513|Homo sapiens GFNV803 protein. 29 8.2
AY182028-1|AAO67549.1| 513|Homo sapiens leucine-rich repeat tra... 29 8.2
>BC110058-1|AAI10059.1| 518|Homo sapiens leucine rich repeat
transmembrane neuronal 4 protein.
Length = 518
Score = 30.3 bits (65), Expect = 4.7
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Frame = +2
Query: 125 LHLRSNNIQTVMVHSY---GNFDPLEL-YHRLRNIS 220
LHLRSN+++TV + + N D L+L Y+RLR++S
Sbjct: 162 LHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLS 197
>BC099738-1|AAH99738.1| 518|Homo sapiens leucine rich repeat
transmembrane neuronal 4 protein.
Length = 518
Score = 30.3 bits (65), Expect = 4.7
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Frame = +2
Query: 125 LHLRSNNIQTVMVHSY---GNFDPLEL-YHRLRNIS 220
LHLRSN+++TV + + N D L+L Y+RLR++S
Sbjct: 162 LHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLS 197
>BC098301-1|AAH98301.1| 519|Homo sapiens LRRTM4 protein protein.
Length = 519
Score = 30.3 bits (65), Expect = 4.7
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Frame = +2
Query: 125 LHLRSNNIQTVMVHSY---GNFDPLEL-YHRLRNIS 220
LHLRSN+++TV + + N D L+L Y+RLR++S
Sbjct: 163 LHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLS 198
>BC098267-1|AAH98267.1| 519|Homo sapiens LRRTM4 protein protein.
Length = 519
Score = 30.3 bits (65), Expect = 4.7
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Frame = +2
Query: 125 LHLRSNNIQTVMVHSY---GNFDPLEL-YHRLRNIS 220
LHLRSN+++TV + + N D L+L Y+RLR++S
Sbjct: 163 LHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLS 198
>AY358324-1|AAQ88690.1| 590|Homo sapiens GFHL3075 protein.
Length = 590
Score = 30.3 bits (65), Expect = 4.7
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Frame = +2
Query: 125 LHLRSNNIQTVMVHSY---GNFDPLEL-YHRLRNIS 220
LHLRSN+++TV + + N D L+L Y+RLR++S
Sbjct: 162 LHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLS 197
>AY182030-1|AAO67551.1| 518|Homo sapiens leucine-rich repeat
transmembrane neuronal 4 protein protein.
Length = 518
Score = 30.3 bits (65), Expect = 4.7
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Frame = +2
Query: 125 LHLRSNNIQTVMVHSY---GNFDPLEL-YHRLRNIS 220
LHLRSN+++TV + + N D L+L Y+RLR++S
Sbjct: 162 LHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLS 197
>AK126961-1|BAC86764.1| 518|Homo sapiens protein ( Homo sapiens
cDNA FLJ45014 fis, clone BRAWH3014609. ).
Length = 518
Score = 30.3 bits (65), Expect = 4.7
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Frame = +2
Query: 125 LHLRSNNIQTVMVHSY---GNFDPLEL-YHRLRNIS 220
LHLRSN+++TV + + N D L+L Y+RLR++S
Sbjct: 162 LHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLS 197
>BC113717-1|AAI13718.1| 581|Homo sapiens leucine rich repeat
transmembrane neuronal 3 protein.
Length = 581
Score = 29.5 bits (63), Expect = 8.2
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 4/37 (10%)
Frame = +2
Query: 122 SLHLRSNNIQTVMVHSYGNFDPLEL----YHRLRNIS 220
SLHLRSN+++T+ V + + LEL Y+R+R+++
Sbjct: 161 SLHLRSNSLRTIPVRIFQDCRNLELLDLGYNRIRSLA 197
>BC113715-1|AAI13716.1| 581|Homo sapiens leucine rich repeat
transmembrane neuronal 3 protein.
Length = 581
Score = 29.5 bits (63), Expect = 8.2
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 4/37 (10%)
Frame = +2
Query: 122 SLHLRSNNIQTVMVHSYGNFDPLEL----YHRLRNIS 220
SLHLRSN+++T+ V + + LEL Y+R+R+++
Sbjct: 161 SLHLRSNSLRTIPVRIFQDCRNLELLDLGYNRIRSLA 197
>BC111492-1|AAI11493.1| 581|Homo sapiens leucine rich repeat
transmembrane neuronal 3 protein.
Length = 581
Score = 29.5 bits (63), Expect = 8.2
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 4/37 (10%)
Frame = +2
Query: 122 SLHLRSNNIQTVMVHSYGNFDPLEL----YHRLRNIS 220
SLHLRSN+++T+ V + + LEL Y+R+R+++
Sbjct: 161 SLHLRSNSLRTIPVRIFQDCRNLELLDLGYNRIRSLA 197
>AY358315-1|AAQ88681.1| 513|Homo sapiens GFNV803 protein.
Length = 513
Score = 29.5 bits (63), Expect = 8.2
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 4/37 (10%)
Frame = +2
Query: 122 SLHLRSNNIQTVMVHSYGNFDPLEL----YHRLRNIS 220
SLHLRSN+++T+ V + + LEL Y+R+R+++
Sbjct: 161 SLHLRSNSLRTIPVRIFQDCRNLELLDLGYNRIRSLA 197
>AY182028-1|AAO67549.1| 513|Homo sapiens leucine-rich repeat
transmembrane neuronal 3 protein protein.
Length = 513
Score = 29.5 bits (63), Expect = 8.2
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 4/37 (10%)
Frame = +2
Query: 122 SLHLRSNNIQTVMVHSYGNFDPLEL----YHRLRNIS 220
SLHLRSN+++T+ V + + LEL Y+R+R+++
Sbjct: 161 SLHLRSNSLRTIPVRIFQDCRNLELLDLGYNRIRSLA 197
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,956,229
Number of Sequences: 237096
Number of extensions: 1596700
Number of successful extensions: 6016
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6016
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5477474182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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