Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o06
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82060-5|CAB04886.1|  257|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF039051-10|AAB94259.3|  313|Caenorhabditis elegans Serpentine r...    28   3.9  
AF040647-7|AAB94996.2|  506|Caenorhabditis elegans Amino acid tr...    27   9.0  

>Z82060-5|CAB04886.1|  257|Caenorhabditis elegans Hypothetical
           protein T27F6.7 protein.
          Length = 257

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 126 FICGPIIYKLLWFIRMGTLIHWSYIIG 206
           F  G ++  LL+ I +G L+HW  IIG
Sbjct: 92  FDAGTVVASLLFLI-IGVLVHWQVIIG 117


>U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical
           protein F32A5.2b protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 80  YKRLDRNV*NINIGSLHLRSNNIQTVMVHSYGNFDPL 190
           Y+RLD +  NI+ G+L  +   + + ++ + G  DPL
Sbjct: 637 YQRLDNSFRNISFGALPFQKGTLHSDVLVNEGGVDPL 673


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 80  YKRLDRNV*NINIGSLHLRSNNIQTVMVHSYGNFDPL 190
           Y+RLD +  NI+ G+L  +   + + ++ + G  DPL
Sbjct: 778 YQRLDNSFRNISFGALPFQKGTLHSDVLVNEGGVDPL 814


>AF039051-10|AAB94259.3|  313|Caenorhabditis elegans Serpentine
           receptor, class i protein73 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 75  NYTKDSIEMCKISTLALFICGPIIYKLLWFIRMGTLIHWSYII 203
           NY +  I   K+S  AL++  P+IY +      G L+ +  ++
Sbjct: 169 NYPEHYINFSKLSHFALYVSSPVIYVVFGMAIFGGLLFFVLLL 211


>AF040647-7|AAB94996.2|  506|Caenorhabditis elegans Amino acid
           transporter protein 7 protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 384 AARIENETLTKAIRAYSGLTLASTVWTVVSLMRY*YIYVSEVKKT 518
           A  IEN   T  I A SG+ +++TV+ ++++  +  + V + K +
Sbjct: 232 AEEIENPRRTLPIAAISGIAISATVFILMNVSYFSVLSVEDFKNS 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,329,280
Number of Sequences: 27780
Number of extensions: 263662
Number of successful extensions: 579
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)