Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o06
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07725.1 68414.m00833 exocyst subunit EXO70 family protein co...    28   3.6  
At3g46130.1 68416.m04992 myb family transcription factor (MYB48)...    27   6.3  
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff...    27   6.3  

>At1g07725.1 68414.m00833 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 566

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 297 RMFPKLKLIATILSVPPQIHMLVLLHRSVAARIE-NETLTK 416
           ++FP L +  TIL + P+I  +     + A R++ NE+L K
Sbjct: 299 KIFPTLDVYQTILQLTPKIDQIFSYDSTAAVRLQANESLEK 339


>At3g46130.1 68416.m04992 myb family transcription factor (MYB48)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 256

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +2

Query: 284 CSSDAYVS*IKTNRYNTKCAPTNSHVGTTA*ECGGSNRKRNFNEGNTSV*RIDFSINSVD 463
           CSS + V+   TN  +T C    S    +  + GGS   R  N+ N  V  +D     +D
Sbjct: 127 CSSSS-VTTTTTNTQDTSCHSRKSSGEVSFYDTGGSRSTREMNQENEDVYSLDDIWREID 185


>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
            effector-related contains similarity to SEN1, a positive
            effector of tRNA-splicing endonuclease [Saccharomyces
            cerevisiae] gi|172574|gb|AAB63976
          Length = 1065

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 75   NYTKDSIEMCKISTLALFICGPIIYKLLWFI 167
            NYTKD IE CK    A  I G I+  + W I
Sbjct: 971  NYTKDEIEKCK----ARCIRGDIVVPMRWSI 997


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,309,240
Number of Sequences: 28952
Number of extensions: 232750
Number of successful extensions: 503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)