Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o05
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    31   0.19 
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    29   0.99 
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    28   1.3  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    28   1.7  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    27   3.0  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    27   4.0  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   4.0  
SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11...    27   4.0  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   7.0  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    26   7.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.2  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    25   9.2  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 666 LHSCLIYLGDLSRYAVEISNHFEP--TIAARYYLQAAH 773
           ++  LIY+GD+ RY  E+ +   P   ++ RYY+ AA+
Sbjct: 298 VYRSLIYIGDVHRYLAEVRSPNVPDYQVSRRYYVMAAN 335


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
            Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
 Frame = +3

Query: 519  IGNFHHFLDRIHYEMKVDFKELDYMPNTEEDELQLSSGNVELS-NFGKSALHSC-LIYL- 689
            +G  +HF+   HY +K     L   P ++ D++  S   V  + +FG  A ++  LIY+ 
Sbjct: 930  LGKAYHFIGLEHYAVKYYEAVLGLSPMSQGDKMTSSESTVSTTYDFGFEAAYNLRLIYIC 989

Query: 690  -GDLSRYAVEISNHF 731
             G++ + A +IS+ +
Sbjct: 990  SGNI-KLAFQISSKY 1003


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 201 SEAKIAERNERAKKLYRYLSDVARRINDMSTTSK 302
           SE K  E NE+ K L  Y+  V  + ND+   +K
Sbjct: 855 SEVKYNELNEQVKTLEGYVETVLEKFNDLKIENK 888


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 27/107 (25%), Positives = 49/107 (45%)
 Frame = +3

Query: 165 NDLKMKNGCLDLSEAKIAERNERAKKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQR 344
           N +     CLD+   ++    ERA++     S + +R N+ +   + +ADL    +E++ 
Sbjct: 420 NSINAAKSCLDVYREQL--NTERARENNLGGSQIEKRANESNNLQREIADLSEQIVELES 477

Query: 345 QKLRDNCEKLLFLDPINYGKKALELLWRKVYYDTISTAKKLRTDSEH 485
           +  R++    L    +  G     LL +K   D+I  A K+   SEH
Sbjct: 478 K--RNDLHSAL----LEMGGNLTSLLTKK---DSI--ANKISDQSEH 513


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 762 VSSIEQQLLVQSDLIFPLHNDLNPLNISNMSAK 664
           +  +++ LLVQSDLI P H++L    I+ +  +
Sbjct: 180 ILDMDKFLLVQSDLIIPHHHELYYFYINKVQGR 212


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 666 LHSCLIYLGDLSRYA 710
           +++C IYLGD++RY+
Sbjct: 168 VYNCFIYLGDMARYS 182


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 246 YRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRD 359
           Y  LSD+A R+ND +       + F   ++V  Q L D
Sbjct: 20  YMALSDLAARLNDANHLKNLKLESFPDTLDVLLQALSD 57


>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = +3

Query: 174 KMKNGCLDLSEAKIAERNERAKKL 245
           ++ NGC+D+ +  + E +++A+K+
Sbjct: 87  RLSNGCVDMQKVNLIETHKKAQKI 110


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +3

Query: 534 HFLDRIHYEMKVDFKELDYMPNTEEDELQLSSGNVELSNFGKSALHSCL 680
           H   +  + +  D  ELD M  T  +E QLSS N E  N  K  L   L
Sbjct: 120 HPYSKTSFPVSYDLDELDTMWLTYYNEFQLSS-NSEWENVSKEFLEIVL 167


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 549 FYLRNGENYQFHIG 508
           + +RNGENY+F +G
Sbjct: 296 YVVRNGENYEFKVG 309


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 375  LFLDPINYGKKALELLWRKVYYDT 446
            + LD +N  KK+  L  +KVYYDT
Sbjct: 4645 VILDNVNTQKKSSILDIKKVYYDT 4668


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 516 GIGNFHHFLDRIHYEMKVDFKELDYMPNTEEDELQL--SSGNVELSNFGKSALHSCL 680
           G+GN H FL   +   K   K L       E EL+     G V L N GKS L +CL
Sbjct: 201 GLGNVH-FLSENNRSPKFATKGLTGEQKLIELELKTICEIGLVGLPNAGKSTLLNCL 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,089
Number of Sequences: 5004
Number of extensions: 66512
Number of successful extensions: 190
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)