Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o05
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3294| Best HMM Match : DUF755 (HMM E-Value=0.22)                    96   3e-20
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)                    31   1.0  
SB_41113| Best HMM Match : VWA (HMM E-Value=1.8e-21)                   31   1.0  
SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_59274| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48)              28   7.4  
SB_47157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_40912| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_3294| Best HMM Match : DUF755 (HMM E-Value=0.22)
          Length = 884

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 5/188 (2%)
 Frame = +3

Query: 225 NERAKKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFLDPINYGK 404
           N    +LYR    +++R++ +  ++    ++F     + RQ+LR NCE L+F  P  YG+
Sbjct: 20  NTSVTRLYRSSIQLSQRLDLILKSATNWEEIFQAETIIIRQRLRSNCESLIFNHPKEYGR 79

Query: 405 KALELLWRKVYYDTISTAKKLRTDSEHDHFLFTLIQCGI----GNFHHFLDRIHYEMKVD 572
           KA ELLWRKV+YD I   ++ R  S +D  L +  +  +    G ++H L ++      +
Sbjct: 80  KAEELLWRKVFYDVIQWLRQHRKVSPNDEHLESSCRSHLISASGYYYHLLIQLQSLYGTN 139

Query: 573 FKELDYMPNTEEDELQLSSG-NVELSNFGKSALHSCLIYLGDLSRYAVEISNHFEPTIAA 749
            K    + +     L  +SG + E++++   A   CL+Y+GDL+RY  E        +A 
Sbjct: 140 LKG---VVSWTAQGLHTASGIDAEVADWALRACQRCLLYMGDLARYQQEFEGEKSIKLAE 196

Query: 750 RYYLQAAH 773
           R+Y +A H
Sbjct: 197 RFYCEALH 204


>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2225

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 582  LDYMPNTEEDELQLSSGNVELSNFGKSALHSCLIYLGDL 698
            L+  P T+E  + L  G++    F + +L  CL+++G L
Sbjct: 1568 LNITPETQEHSVTLRLGDLSAGTFVEKSLEKCLLFIGKL 1606


>SB_41113| Best HMM Match : VWA (HMM E-Value=1.8e-21)
          Length = 240

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 198 LSEAKIAERNERAKKLYRYLSDVARRINDMSTTSKFVADL---FTTNIEVQRQKLRDNCE 368
           ++E    +  E AK++   LS + R I         VAD+   FTT  +  +  LR+N +
Sbjct: 18  VTEQMFKQEKEFAKRIAEALSGLPREIRLSVAPYSNVADISIPFTTFTQESKNVLRENID 77

Query: 369 KLLFL 383
           K+ FL
Sbjct: 78  KITFL 82


>SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +3

Query: 219 ERNERAKKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEK 371
           +R  R ++L+ ++S  +  ++ +S T     D+F +++E+      + CEK
Sbjct: 424 DRKRRKRRLFLFISSRSVPVSPVSATPSVPEDVFLSDLEIDYAFHSEVCEK 474


>SB_59274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 525 NFHHFLDRIH--YEMKVDFKELDYMPNTEE 608
           N+HH ++R +    +  DF++LD+  N EE
Sbjct: 29  NYHHHVERFYDLLHLSNDFRDLDFKHNLEE 58


>SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48)
          Length = 643

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 150 LVRR*NDLKMKNGCLDLSEAKIAERNERAKKLYRYLSDVARR 275
           LVR   +L+MK   L  ++  I + NER +++   L+D A+R
Sbjct: 386 LVRTRKELEMKEKELQKAQETIQQMNEREQQMKERLADQAQR 427


>SB_47157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 543 DRIHYEMKVDFKELDYMPNTEEDEL 617
           D + Y+M  D+ EL Y   T+ DEL
Sbjct: 26  DELSYDMTTDYDELFYDTTTDSDEL 50


>SB_40912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 349 FCLWTSMLVVKRSATNLLVVDMSLIRLAT 263
           F LW  +L+ K  ATN  V D  L R AT
Sbjct: 7   FKLWAFLLIAKTVATNTEVCDSGLKRSAT 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,300,715
Number of Sequences: 59808
Number of extensions: 429620
Number of successful extensions: 1005
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)