Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10o05
(779 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC038296-1|AAH38296.1| 1016|Homo sapiens Smg-5 homolog, nonsense... 101 4e-21
AY336728-1|AAQ84301.1| 1016|Homo sapiens LPTS interacting protei... 101 4e-21
AY168922-1|AAO17582.1| 1016|Homo sapiens Est1p-like protein B pr... 101 4e-21
AL589685-2|CAI14160.1| 1016|Homo sapiens Smg-5 homolog, nonsense... 101 4e-21
AL589685-1|CAI14159.1| 374|Homo sapiens Smg-5 homolog, nonsense... 101 4e-21
AL135927-6|CAI15525.1| 1016|Homo sapiens Smg-5 homolog, nonsense... 101 4e-21
AL135927-5|CAI15524.1| 374|Homo sapiens Smg-5 homolog, nonsense... 101 4e-21
AB085691-1|BAC53623.1| 1016|Homo sapiens SMG-5 protein. 101 4e-21
AB029012-1|BAA83041.2| 1033|Homo sapiens KIAA1089 protein protein. 101 4e-21
AY168921-1|AAO17581.1| 1388|Homo sapiens Est1p-like protein A pr... 36 0.12
AY145883-1|AAN46114.1| 1419|Homo sapiens telomerase subunit EST1... 36 0.12
AB018275-1|BAA34452.2| 1449|Homo sapiens KIAA0732 protein protein. 36 0.12
AF212995-1|AAK16812.1| 782|Homo sapiens cullin CUL4B protein. 31 4.7
>BC038296-1|AAH38296.1| 1016|Homo sapiens Smg-5 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1016
Score = 101 bits (241), Expect = 4e-21
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 12/189 (6%)
Frame = +3
Query: 237 KKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFLDPINYGKKALE 416
K+LYR + + R++ + ++F R KLR+ C KL+FL P++YG+KA E
Sbjct: 21 KRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEE 80
Query: 417 LLWRKVYYDTISTAKKLRTDSEHDHFLFTL-------IQCGIGNFHHFLDRI--HYEMKV 569
LLWRKVYY+ I + ++T+ +H H TL + GIG + H L I HY++++
Sbjct: 81 LLWRKVYYEVI---QLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLEL 137
Query: 570 DFKELDYMPNTEE---DELQLSSGNVELSNFGKSALHSCLIYLGDLSRYAVEISNHFEPT 740
+D+ T+ + +S+ E+ ++ + A H CL+YLGDLSRY E++
Sbjct: 138 QCC-IDWTHVTDPLIGCKKPVSASGKEM-DWAQMACHRCLVYLGDLSRYQNELAGVDTEL 195
Query: 741 IAARYYLQA 767
+A R+Y QA
Sbjct: 196 LAERFYYQA 204
>AY336728-1|AAQ84301.1| 1016|Homo sapiens LPTS interacting protein
protein.
Length = 1016
Score = 101 bits (241), Expect = 4e-21
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 12/189 (6%)
Frame = +3
Query: 237 KKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFLDPINYGKKALE 416
K+LYR + + R++ + ++F R KLR+ C KL+FL P++YG+KA E
Sbjct: 21 KRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEE 80
Query: 417 LLWRKVYYDTISTAKKLRTDSEHDHFLFTL-------IQCGIGNFHHFLDRI--HYEMKV 569
LLWRKVYY+ I + ++T+ +H H TL + GIG + H L I HY++++
Sbjct: 81 LLWRKVYYEVI---QLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLEL 137
Query: 570 DFKELDYMPNTEE---DELQLSSGNVELSNFGKSALHSCLIYLGDLSRYAVEISNHFEPT 740
+D+ T+ + +S+ E+ ++ + A H CL+YLGDLSRY E++
Sbjct: 138 QCC-IDWTHVTDPLIGCKKPVSASGKEM-DWAQMACHRCLVYLGDLSRYQNELAGVDTEL 195
Query: 741 IAARYYLQA 767
+A R+Y QA
Sbjct: 196 LAERFYYQA 204
>AY168922-1|AAO17582.1| 1016|Homo sapiens Est1p-like protein B
protein.
Length = 1016
Score = 101 bits (241), Expect = 4e-21
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 12/189 (6%)
Frame = +3
Query: 237 KKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFLDPINYGKKALE 416
K+LYR + + R++ + ++F R KLR+ C KL+FL P++YG+KA E
Sbjct: 21 KRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEE 80
Query: 417 LLWRKVYYDTISTAKKLRTDSEHDHFLFTL-------IQCGIGNFHHFLDRI--HYEMKV 569
LLWRKVYY+ I + ++T+ +H H TL + GIG + H L I HY++++
Sbjct: 81 LLWRKVYYEVI---QLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLEL 137
Query: 570 DFKELDYMPNTEE---DELQLSSGNVELSNFGKSALHSCLIYLGDLSRYAVEISNHFEPT 740
+D+ T+ + +S+ E+ ++ + A H CL+YLGDLSRY E++
Sbjct: 138 QCC-IDWTHVTDPLIGCKKPVSASGKEM-DWAQMACHRCLVYLGDLSRYQNELAGVDTEL 195
Query: 741 IAARYYLQA 767
+A R+Y QA
Sbjct: 196 LAERFYYQA 204
>AL589685-2|CAI14160.1| 1016|Homo sapiens Smg-5 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1016
Score = 101 bits (241), Expect = 4e-21
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 12/189 (6%)
Frame = +3
Query: 237 KKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFLDPINYGKKALE 416
K+LYR + + R++ + ++F R KLR+ C KL+FL P++YG+KA E
Sbjct: 21 KRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEE 80
Query: 417 LLWRKVYYDTISTAKKLRTDSEHDHFLFTL-------IQCGIGNFHHFLDRI--HYEMKV 569
LLWRKVYY+ I + ++T+ +H H TL + GIG + H L I HY++++
Sbjct: 81 LLWRKVYYEVI---QLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLEL 137
Query: 570 DFKELDYMPNTEE---DELQLSSGNVELSNFGKSALHSCLIYLGDLSRYAVEISNHFEPT 740
+D+ T+ + +S+ E+ ++ + A H CL+YLGDLSRY E++
Sbjct: 138 QCC-IDWTHVTDPLIGCKKPVSASGKEM-DWAQMACHRCLVYLGDLSRYQNELAGVDTEL 195
Query: 741 IAARYYLQA 767
+A R+Y QA
Sbjct: 196 LAERFYYQA 204
>AL589685-1|CAI14159.1| 374|Homo sapiens Smg-5 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 374
Score = 101 bits (241), Expect = 4e-21
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 12/189 (6%)
Frame = +3
Query: 237 KKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFLDPINYGKKALE 416
K+LYR + + R++ + ++F R KLR+ C KL+FL P++YG+KA E
Sbjct: 21 KRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEE 80
Query: 417 LLWRKVYYDTISTAKKLRTDSEHDHFLFTL-------IQCGIGNFHHFLDRI--HYEMKV 569
LLWRKVYY+ I + ++T+ +H H TL + GIG + H L I HY++++
Sbjct: 81 LLWRKVYYEVI---QLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLEL 137
Query: 570 DFKELDYMPNTEE---DELQLSSGNVELSNFGKSALHSCLIYLGDLSRYAVEISNHFEPT 740
+D+ T+ + +S+ E+ ++ + A H CL+YLGDLSRY E++
Sbjct: 138 QCC-IDWTHVTDPLIGCKKPVSASGKEM-DWAQMACHRCLVYLGDLSRYQNELAGVDTEL 195
Query: 741 IAARYYLQA 767
+A R+Y QA
Sbjct: 196 LAERFYYQA 204
>AL135927-6|CAI15525.1| 1016|Homo sapiens Smg-5 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1016
Score = 101 bits (241), Expect = 4e-21
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 12/189 (6%)
Frame = +3
Query: 237 KKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFLDPINYGKKALE 416
K+LYR + + R++ + ++F R KLR+ C KL+FL P++YG+KA E
Sbjct: 21 KRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEE 80
Query: 417 LLWRKVYYDTISTAKKLRTDSEHDHFLFTL-------IQCGIGNFHHFLDRI--HYEMKV 569
LLWRKVYY+ I + ++T+ +H H TL + GIG + H L I HY++++
Sbjct: 81 LLWRKVYYEVI---QLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLEL 137
Query: 570 DFKELDYMPNTEE---DELQLSSGNVELSNFGKSALHSCLIYLGDLSRYAVEISNHFEPT 740
+D+ T+ + +S+ E+ ++ + A H CL+YLGDLSRY E++
Sbjct: 138 QCC-IDWTHVTDPLIGCKKPVSASGKEM-DWAQMACHRCLVYLGDLSRYQNELAGVDTEL 195
Query: 741 IAARYYLQA 767
+A R+Y QA
Sbjct: 196 LAERFYYQA 204
>AL135927-5|CAI15524.1| 374|Homo sapiens Smg-5 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 374
Score = 101 bits (241), Expect = 4e-21
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 12/189 (6%)
Frame = +3
Query: 237 KKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFLDPINYGKKALE 416
K+LYR + + R++ + ++F R KLR+ C KL+FL P++YG+KA E
Sbjct: 21 KRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEE 80
Query: 417 LLWRKVYYDTISTAKKLRTDSEHDHFLFTL-------IQCGIGNFHHFLDRI--HYEMKV 569
LLWRKVYY+ I + ++T+ +H H TL + GIG + H L I HY++++
Sbjct: 81 LLWRKVYYEVI---QLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLEL 137
Query: 570 DFKELDYMPNTEE---DELQLSSGNVELSNFGKSALHSCLIYLGDLSRYAVEISNHFEPT 740
+D+ T+ + +S+ E+ ++ + A H CL+YLGDLSRY E++
Sbjct: 138 QCC-IDWTHVTDPLIGCKKPVSASGKEM-DWAQMACHRCLVYLGDLSRYQNELAGVDTEL 195
Query: 741 IAARYYLQA 767
+A R+Y QA
Sbjct: 196 LAERFYYQA 204
>AB085691-1|BAC53623.1| 1016|Homo sapiens SMG-5 protein.
Length = 1016
Score = 101 bits (241), Expect = 4e-21
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 12/189 (6%)
Frame = +3
Query: 237 KKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFLDPINYGKKALE 416
K+LYR + + R++ + ++F R KLR+ C KL+FL P++YG+KA E
Sbjct: 21 KRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEE 80
Query: 417 LLWRKVYYDTISTAKKLRTDSEHDHFLFTL-------IQCGIGNFHHFLDRI--HYEMKV 569
LLWRKVYY+ I + ++T+ +H H TL + GIG + H L I HY++++
Sbjct: 81 LLWRKVYYEVI---QLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLEL 137
Query: 570 DFKELDYMPNTEE---DELQLSSGNVELSNFGKSALHSCLIYLGDLSRYAVEISNHFEPT 740
+D+ T+ + +S+ E+ ++ + A H CL+YLGDLSRY E++
Sbjct: 138 QCC-IDWTHVTDPLIGCKKPVSASGKEM-DWAQMACHRCLVYLGDLSRYQNELAGVDTEL 195
Query: 741 IAARYYLQA 767
+A R+Y QA
Sbjct: 196 LAERFYYQA 204
>AB029012-1|BAA83041.2| 1033|Homo sapiens KIAA1089 protein protein.
Length = 1033
Score = 101 bits (241), Expect = 4e-21
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 12/189 (6%)
Frame = +3
Query: 237 KKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFLDPINYGKKALE 416
K+LYR + + R++ + ++F R KLR+ C KL+FL P++YG+KA E
Sbjct: 38 KRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEE 97
Query: 417 LLWRKVYYDTISTAKKLRTDSEHDHFLFTL-------IQCGIGNFHHFLDRI--HYEMKV 569
LLWRKVYY+ I + ++T+ +H H TL + GIG + H L I HY++++
Sbjct: 98 LLWRKVYYEVI---QLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLEL 154
Query: 570 DFKELDYMPNTEE---DELQLSSGNVELSNFGKSALHSCLIYLGDLSRYAVEISNHFEPT 740
+D+ T+ + +S+ E+ ++ + A H CL+YLGDLSRY E++
Sbjct: 155 QCC-IDWTHVTDPLIGCKKPVSASGKEM-DWAQMACHRCLVYLGDLSRYQNELAGVDTEL 212
Query: 741 IAARYYLQA 767
+A R+Y QA
Sbjct: 213 LAERFYYQA 221
>AY168921-1|AAO17581.1| 1388|Homo sapiens Est1p-like protein A
protein.
Length = 1388
Score = 36.3 bits (80), Expect = 0.12
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 8/152 (5%)
Frame = +3
Query: 342 RQKLRDNCEKLLFLD-PINYGKKALELLWRKVYYDTISTAKKLRTDSEHDH------FLF 500
R +L E+ + LD + + ++LW+ +Y I ++L D ++ L
Sbjct: 585 RAELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLVKDPNVENPEQIRNRLL 644
Query: 501 TLIQCGIGNFHHFLDRIHYEMKVDFKELDYMPNTEEDELQLSSGNVELS-NFGKSALHSC 677
L+ G F L ++ K FK DYM D L + S + + + + C
Sbjct: 645 ELLDEGSDFFDSLLQKLQVTYK--FKLEDYM-----DGLAIRSKPLRKTVKYALISAQRC 697
Query: 678 LIYLGDLSRYAVEISNHFEPTIAARYYLQAAH 773
+I GD++RY + S+ A +YL+A H
Sbjct: 698 MICQGDIARYREQASDTANYGKARSWYLKAQH 729
>AY145883-1|AAN46114.1| 1419|Homo sapiens telomerase subunit EST1A
protein.
Length = 1419
Score = 36.3 bits (80), Expect = 0.12
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 8/152 (5%)
Frame = +3
Query: 342 RQKLRDNCEKLLFLD-PINYGKKALELLWRKVYYDTISTAKKLRTDSEHDH------FLF 500
R +L E+ + LD + + ++LW+ +Y I ++L D ++ L
Sbjct: 616 RAELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLVKDPNVENPEQIRNRLL 675
Query: 501 TLIQCGIGNFHHFLDRIHYEMKVDFKELDYMPNTEEDELQLSSGNVELS-NFGKSALHSC 677
L+ G F L ++ K FK DYM D L + S + + + + C
Sbjct: 676 ELLDEGSDFFDSLLQKLQVTYK--FKLEDYM-----DGLAIRSKPLRKTVKYALISAQRC 728
Query: 678 LIYLGDLSRYAVEISNHFEPTIAARYYLQAAH 773
+I GD++RY + S+ A +YL+A H
Sbjct: 729 MICQGDIARYREQASDTANYGKARSWYLKAQH 760
>AB018275-1|BAA34452.2| 1449|Homo sapiens KIAA0732 protein protein.
Length = 1449
Score = 36.3 bits (80), Expect = 0.12
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 8/152 (5%)
Frame = +3
Query: 342 RQKLRDNCEKLLFLD-PINYGKKALELLWRKVYYDTISTAKKLRTDSEHDH------FLF 500
R +L E+ + LD + + ++LW+ +Y I ++L D ++ L
Sbjct: 646 RAELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLVKDPNVENPEQIRNRLL 705
Query: 501 TLIQCGIGNFHHFLDRIHYEMKVDFKELDYMPNTEEDELQLSSGNVELS-NFGKSALHSC 677
L+ G F L ++ K FK DYM D L + S + + + + C
Sbjct: 706 ELLDEGSDFFDSLLQKLQVTYK--FKLEDYM-----DGLAIRSKPLRKTVKYALISAQRC 758
Query: 678 LIYLGDLSRYAVEISNHFEPTIAARYYLQAAH 773
+I GD++RY + S+ A +YL+A H
Sbjct: 759 MICQGDIARYREQASDTANYGKARSWYLKAQH 790
>AF212995-1|AAK16812.1| 782|Homo sapiens cullin CUL4B protein.
Length = 782
Score = 31.1 bits (67), Expect = 4.7
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Frame = +3
Query: 297 SKFV-ADLFTTNIEVQRQKLRDNCEKLLFLDPINYGKKALELLWRKVYYDTISTAKKLRT 473
+K+V + L N E ++L +K++ + YGK E ++K + K
Sbjct: 431 AKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASV 490
Query: 474 DSEHDHFLFTLIQCGIGNFHHFLDRIHYEMK------VDFKELDYMPNTEEDELQLSSGN 635
D+E +CG F L+ + +M+ + FK++ YM N Q GN
Sbjct: 491 DAEKSMLSKLKHECGAA-FTSKLEGMFKDMELSKDIMIQFKQVKYMQN------QNVPGN 543
Query: 636 VELS 647
+EL+
Sbjct: 544 IELT 547
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,897,623
Number of Sequences: 237096
Number of extensions: 2104117
Number of successful extensions: 3688
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3679
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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