Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o05
         (779 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ556817-1|CAD89222.1| 1177|Drosophila melanogaster SMG5 protein...    71   2e-12
AE014134-2425|AAF53352.1| 1177|Drosophila melanogaster CG8954-PB...    71   2e-12
AE014134-2424|AAF53351.1| 1177|Drosophila melanogaster CG8954-PA...    71   2e-12
Y17918-1|CAA76938.1| 1441|Drosophila melanogaster CRAG protein p...    33   0.33 
AY094962-1|AAM11315.1| 1083|Drosophila melanogaster SD04240p pro...    33   0.33 
AE014298-1214|AAF46397.3| 1644|Drosophila melanogaster CG12737-P...    33   0.33 
AE014298-1213|AAF46398.3| 1671|Drosophila melanogaster CG12737-P...    33   0.33 
AY118499-1|AAM49868.1|  231|Drosophila melanogaster LD08826p pro...    29   7.2  
AE013599-1170|AAF58754.1|  231|Drosophila melanogaster CG12935-P...    29   7.2  
AE014297-2349|AAF55416.1|  465|Drosophila melanogaster CG17283-P...    29   9.5  

>AJ556817-1|CAD89222.1| 1177|Drosophila melanogaster SMG5 protein
           protein.
          Length = 1177

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 27/208 (12%)
 Frame = +3

Query: 225 NERAKKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFLDPINYGK 404
           ++  K LYR L   +++++D     + V  LF   IE +R  L   C++++F D  + GK
Sbjct: 39  SQEVKDLYRSLYTASKQLDDAKRNVQSVGQLFQHEIEEKRSLLVQLCKQIIFKDYQSVGK 98

Query: 405 KALELLWRKVYYDTISTAKK--------LRTDSEHDHFLFTLIQCGIGNFHHFLDRIHYE 560
           K  E++WR+ YY+ I+  KK          T  E+   L   +  GI N+     R+   
Sbjct: 99  KVREVMWRRGYYEFIAFVKKNWHKQCQDAATAQENMQKLERFLCAGIFNYKRLSARMEEI 158

Query: 561 MKVDFKEL--------DYMPNTEEDELQLS-SG------NVELSNFGKSALHSCLIYLGD 695
             +D K L         Y+ +   D ++ S SG      ++E  +F    +HS L+ LGD
Sbjct: 159 YDLDLKYLIDFSIISDGYISDMIGDTMESSHSGTHAVDKSLEAVSFALDTIHSSLLSLGD 218

Query: 696 LSRYAVEISNHFEPTIA----ARYYLQA 767
           L RY ++     + +I+    A+YYL+A
Sbjct: 219 LHRYFLDFRIDSKLSISKEQVAKYYLEA 246


>AE014134-2425|AAF53352.1| 1177|Drosophila melanogaster CG8954-PB,
           isoform B protein.
          Length = 1177

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 27/208 (12%)
 Frame = +3

Query: 225 NERAKKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFLDPINYGK 404
           ++  K LYR L   +++++D     + V  LF   IE +R  L   C++++F D  + GK
Sbjct: 39  SQEVKDLYRSLYTASKQLDDAKRNVQSVGQLFQHEIEEKRSLLVQLCKQIIFKDYQSVGK 98

Query: 405 KALELLWRKVYYDTISTAKK--------LRTDSEHDHFLFTLIQCGIGNFHHFLDRIHYE 560
           K  E++WR+ YY+ I+  KK          T  E+   L   +  GI N+     R+   
Sbjct: 99  KVREVMWRRGYYEFIAFVKKNWHKQCQDAATAQENMQKLERFLCAGIFNYKRLSARMEEI 158

Query: 561 MKVDFKEL--------DYMPNTEEDELQLS-SG------NVELSNFGKSALHSCLIYLGD 695
             +D K L         Y+ +   D ++ S SG      ++E  +F    +HS L+ LGD
Sbjct: 159 YDLDLKYLIDFSIISDGYISDMIGDTMESSHSGTHAVDKSLEAVSFALDTIHSSLLSLGD 218

Query: 696 LSRYAVEISNHFEPTIA----ARYYLQA 767
           L RY ++     + +I+    A+YYL+A
Sbjct: 219 LHRYFLDFRIDSKLSISKEQVAKYYLEA 246


>AE014134-2424|AAF53351.1| 1177|Drosophila melanogaster CG8954-PA,
           isoform A protein.
          Length = 1177

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 27/208 (12%)
 Frame = +3

Query: 225 NERAKKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFLDPINYGK 404
           ++  K LYR L   +++++D     + V  LF   IE +R  L   C++++F D  + GK
Sbjct: 39  SQEVKDLYRSLYTASKQLDDAKRNVQSVGQLFQHEIEEKRSLLVQLCKQIIFKDYQSVGK 98

Query: 405 KALELLWRKVYYDTISTAKK--------LRTDSEHDHFLFTLIQCGIGNFHHFLDRIHYE 560
           K  E++WR+ YY+ I+  KK          T  E+   L   +  GI N+     R+   
Sbjct: 99  KVREVMWRRGYYEFIAFVKKNWHKQCQDAATAQENMQKLERFLCAGIFNYKRLSARMEEI 158

Query: 561 MKVDFKEL--------DYMPNTEEDELQLS-SG------NVELSNFGKSALHSCLIYLGD 695
             +D K L         Y+ +   D ++ S SG      ++E  +F    +HS L+ LGD
Sbjct: 159 YDLDLKYLIDFSIISDGYISDMIGDTMESSHSGTHAVDKSLEAVSFALDTIHSSLLSLGD 218

Query: 696 LSRYAVEISNHFEPTIA----ARYYLQA 767
           L RY ++     + +I+    A+YYL+A
Sbjct: 219 LHRYFLDFRIDSKLSISKEQVAKYYLEA 246


>Y17918-1|CAA76938.1| 1441|Drosophila melanogaster CRAG protein
           protein.
          Length = 1441

 Score = 33.5 bits (73), Expect = 0.33
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
 Frame = +3

Query: 258 SDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFL-------DPINYGKKALE 416
           S +ARR       S+ +A     + E   + L   C  L FL       DP + GK+  E
Sbjct: 619 SPIARRTKHEIKLSQKMASRCQQHPEAWSKYLLATCYSLYFLILPSMVLDPRHAGKEP-E 677

Query: 417 LLWRKVYYDTISTAKKLRTDSEHDHFLFTLIQCGIGNFHHFLDRIHYEMK 566
           +L  +  YD +  A +L+   +   +   +  CGI N      R+HY MK
Sbjct: 678 IL--RAAYDVLVRASRLKITCDEFCYRIMMQLCGIHNLPVLAVRLHYLMK 725


>AY094962-1|AAM11315.1| 1083|Drosophila melanogaster SD04240p
           protein.
          Length = 1083

 Score = 33.5 bits (73), Expect = 0.33
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
 Frame = +3

Query: 258 SDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFL-------DPINYGKKALE 416
           S +ARR       S+ +A     + E   + L   C  L FL       DP + GK+  E
Sbjct: 168 SPIARRTKHEIKLSQKMASRCQQHPEAWSKYLLATCYSLYFLILPSMVLDPRHAGKEP-E 226

Query: 417 LLWRKVYYDTISTAKKLRTDSEHDHFLFTLIQCGIGNFHHFLDRIHYEMK 566
           +L  +  YD +  A +L+   +   +   +  CGI N      R+HY MK
Sbjct: 227 IL--RAAYDVLVRASRLKITCDEFCYRIMMQLCGIHNLPVLAVRLHYLMK 274


>AE014298-1214|AAF46397.3| 1644|Drosophila melanogaster CG12737-PB,
            isoform B protein.
          Length = 1644

 Score = 33.5 bits (73), Expect = 0.33
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
 Frame = +3

Query: 258  SDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFL-------DPINYGKKALE 416
            S +ARR       S+ +A     + E   + L   C  L FL       DP + GK+  E
Sbjct: 729  SPIARRTKHEIKLSQKMASRCQQHPEAWSKYLLATCYSLYFLILPSMVLDPRHAGKEP-E 787

Query: 417  LLWRKVYYDTISTAKKLRTDSEHDHFLFTLIQCGIGNFHHFLDRIHYEMK 566
            +L  +  YD +  A +L+   +   +   +  CGI N      R+HY MK
Sbjct: 788  IL--RAAYDVLVRASRLKITCDEFCYRIMMQLCGIHNLPVLAVRLHYLMK 835


>AE014298-1213|AAF46398.3| 1671|Drosophila melanogaster CG12737-PA,
            isoform A protein.
          Length = 1671

 Score = 33.5 bits (73), Expect = 0.33
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
 Frame = +3

Query: 258  SDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFL-------DPINYGKKALE 416
            S +ARR       S+ +A     + E   + L   C  L FL       DP + GK+  E
Sbjct: 729  SPIARRTKHEIKLSQKMASRCQQHPEAWSKYLLATCYSLYFLILPSMVLDPRHAGKEP-E 787

Query: 417  LLWRKVYYDTISTAKKLRTDSEHDHFLFTLIQCGIGNFHHFLDRIHYEMK 566
            +L  +  YD +  A +L+   +   +   +  CGI N      R+HY MK
Sbjct: 788  IL--RAAYDVLVRASRLKITCDEFCYRIMMQLCGIHNLPVLAVRLHYLMK 835


>AY118499-1|AAM49868.1|  231|Drosophila melanogaster LD08826p
           protein.
          Length = 231

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 143 DLKKKVPLTSMCYFIKYANEKHFVIIIFPMNYIGLCIFLAWTYPSFF 3
           D+   VP   + +  KY N + + ++    N+ G+C F+ WTY S F
Sbjct: 52  DVNTSVPKDIILF--KYENPRFYQML----NFFGVCQFVFWTYLSHF 92


>AE013599-1170|AAF58754.1|  231|Drosophila melanogaster CG12935-PA
           protein.
          Length = 231

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 143 DLKKKVPLTSMCYFIKYANEKHFVIIIFPMNYIGLCIFLAWTYPSFF 3
           D+   VP   + +  KY N + + ++    N+ G+C F+ WTY S F
Sbjct: 52  DVNTSVPKDIILF--KYENPRFYQML----NFFGVCQFVFWTYLSHF 92


>AE014297-2349|AAF55416.1|  465|Drosophila melanogaster CG17283-PA
           protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 692 GFKSLCSGNIKSL*TNNCCSILLTSCSY 775
           G++S+   N+K+L  N C   ++TSC +
Sbjct: 260 GYRSIAVDNVKTLVQNMCSEDVITSCKF 287


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,634,753
Number of Sequences: 53049
Number of extensions: 646832
Number of successful extensions: 1623
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)