Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o05
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical pr...    33   0.17 
Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical pr...    33   0.17 
U97549-9|AAB52849.2|  472|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    29   2.8  
Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    28   8.6  
AF067937-2|AAF99916.1|  381|Caenorhabditis elegans Choline kinas...    28   8.6  

>Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical
           protein F25F2.1b protein.
          Length = 584

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 384 DPINYGKKALELLWRKVYYD---TISTAKKLRT 473
           DP N+ +K LE  WR++Y D   TI T K L T
Sbjct: 99  DPPNFARKVLEAEWREMYVDPKVTIETVKTLNT 131


>Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical
           protein F25F2.1a protein.
          Length = 581

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 384 DPINYGKKALELLWRKVYYD---TISTAKKLRT 473
           DP N+ +K LE  WR++Y D   TI T K L T
Sbjct: 99  DPPNFARKVLEAEWREMYVDPKVTIETVKTLNT 131


>U97549-9|AAB52849.2|  472|Caenorhabditis elegans Hypothetical
           protein F15A8.7 protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = -3

Query: 771 EQLVSSIEQQLLVQSDLIFPLHNDLNPLNISNMSAKQIFQNLIVQHYQKIVATHL 607
           + L++ IE ++    ++ +P+   L+  +I+ + A+Q+F +     Y+K    HL
Sbjct: 107 DNLIARIEPEMQFMEEVQYPMVQQLSKNDINWLKARQLFSSDQASEYKKYGFAHL 161


>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
            protein T04H1.4b protein.
          Length = 1312

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/92 (25%), Positives = 45/92 (48%)
 Frame = +3

Query: 204  EAKIAERNERAKKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFL 383
            + KIAE     K+     S+    I +++ T + ++DL      +    ++ + EK+  +
Sbjct: 1072 QKKIAEAKLSTKECQNAESNYRDAIIELAITKESISDLTKYRNCLDASLIQFHSEKMGRV 1131

Query: 384  DPINYGKKALELLWRKVYYDTISTAKKLRTDS 479
            + I      ++ LWRKVY  T  T  ++R+D+
Sbjct: 1132 NGI------IDDLWRKVYNSTDITTIRIRSDA 1157


>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
            T04H1.4a protein.
          Length = 1298

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/92 (25%), Positives = 45/92 (48%)
 Frame = +3

Query: 204  EAKIAERNERAKKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFL 383
            + KIAE     K+     S+    I +++ T + ++DL      +    ++ + EK+  +
Sbjct: 1058 QKKIAEAKLSTKECQNAESNYRDAIIELAITKESISDLTKYRNCLDASLIQFHSEKMGRV 1117

Query: 384  DPINYGKKALELLWRKVYYDTISTAKKLRTDS 479
            + I      ++ LWRKVY  T  T  ++R+D+
Sbjct: 1118 NGI------IDDLWRKVYNSTDITTIRIRSDA 1143


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
            ceRAD50 protein.
          Length = 1298

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/92 (25%), Positives = 45/92 (48%)
 Frame = +3

Query: 204  EAKIAERNERAKKLYRYLSDVARRINDMSTTSKFVADLFTTNIEVQRQKLRDNCEKLLFL 383
            + KIAE     K+     S+    I +++ T + ++DL      +    ++ + EK+  +
Sbjct: 1058 QKKIAEAKLSTKECQNAESNYRDAIIELAITKESISDLTKYRNCLDASLIQFHSEKMGRV 1117

Query: 384  DPINYGKKALELLWRKVYYDTISTAKKLRTDS 479
            + I      ++ LWRKVY  T  T  ++R+D+
Sbjct: 1118 NGI------IDDLWRKVYNSTDITTIRIRSDA 1143


>Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical
           protein T11F9.18 protein.
          Length = 311

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 104 FIKYANEKHFVIIIFPMNYIGLCIFLAWTYPSFF 3
           F+KY     FV +  P+ YI  C  L W  PSFF
Sbjct: 12  FLKYLGHI-FVCLTAPI-YIATCFILIWKCPSFF 43


>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical protein
            ZK897.1 protein.
          Length = 1396

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 717  FPLHNDLNPLNISNMSAKQ-IFQNLIVQHYQKIVATHL 607
            FPL   LN   +S  S K  IF N IVQ +Q +V  ++
Sbjct: 1036 FPLFQMLNDFLLSESSLKGGIFHNKIVQQFQPLVVRYI 1073


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
            protein C56C10.12 protein.
          Length = 1599

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -3

Query: 774  YEQLVSSIEQQLLVQSDLIFPLHNDLNPLNISNMSAKQIFQNLIVQHYQKI 622
            Y ++V + E  ++V  +   PL +DL     S++++  +   LI QHYQ +
Sbjct: 923  YVRIVQNCEDDVVVYLEKGVPLLSDLVTSG-SSVASVVLLSRLIAQHYQNV 972


>AF067937-2|AAF99916.1|  381|Caenorhabditis elegans Choline kinase b
           protein 4 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 777 QYEQLVSSIEQQLLVQSDLIFPLHNDLNPLNISNMS 670
           Q EQ +++ E+   V  + I   HNDL PLN+  ++
Sbjct: 196 QIEQEIATFERWCKVFDETIVFSHNDLAPLNVLELN 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,462,394
Number of Sequences: 27780
Number of extensions: 358966
Number of successful extensions: 927
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)