Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o04
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.4  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    26   2.4  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.6  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   5.6  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     25   5.6  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    24   7.4  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    24   7.4  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    24   7.4  

>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 213 DLLAQYPDITKPASFKEVSSHNVLHYIETTGPPVHARAR 97
           DL  +YPD  +  S  E++   V+H I+ T   +H + +
Sbjct: 95  DLKQKYPDAAEYISKIEINGGKVMHEIDATKLHLHKKLK 133


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 201 QYPDITKPASFKEVSSHNVLHYIETTGPPVHARARPLAPIFR 76
           Q P   K  +  +++ H   HY +++GP     ++P++P F+
Sbjct: 8   QCPVCAKTVTMNDINPHLDSHYSDSSGP-----SKPVSPFFK 44


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 156 SHNVLHYIETTGPPVHARARPLAPIF 79
           SHN  H IE     ++   RPL  +F
Sbjct: 273 SHNYQHLIENESADINIAHRPLTTLF 298


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 124 SSFNIMQNVMRTYFLK*RWFRNVGVLR*QITIW 222
           + F +M  +++ Y    RWF N+  +   ITIW
Sbjct: 45  TDFKLMYVIVKFY----RWFNNLSFITRWITIW 73


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 387 ADVKQAILGADFLTSNNLLVDMGERKLIDK 298
           ADV   ++    +  +++L+ + E KLIDK
Sbjct: 411 ADVATVVIDGKLIVEDHVLLTIDEPKLIDK 440


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 222 PYRDLLAQYPDITKPASFKEV 160
           P+RD L  YP  + P +FK V
Sbjct: 64  PFRDSLNSYPLPSAPPNFKSV 84


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 165 P*MTLVS*CRGTALTNHDMDDSHQQYAMKVDC*QQYKLIHSDLL 296
           P +TL     G    NH +  +H  Y M  +   +Y++ ++D+L
Sbjct: 174 PNVTLTIKKNGGIKFNHTVPLTHMDYKMAYNILHEYRIHNADIL 217


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 357 DFLTSNNLLVDMGERK 310
           DFLTS  +L +M ERK
Sbjct: 256 DFLTSKTILENMAERK 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,496,015
Number of Sequences: 5004
Number of extensions: 26627
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)