Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o04
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0131 + 8779006-8779073,8779517-8779662,8779739-8780794,878...    29   1.8  
05_05_0251 + 23616546-23617760                                         28   2.4  

>05_03_0131 +
           8779006-8779073,8779517-8779662,8779739-8780794,
           8781070-8781232,8781423-8781494,8782076-8782147,
           8782643-8782815,8782958-8783163,8783277-8783403,
           8783793-8783864,8783984-8784176,8784298-8784768,
           8785635-8785740
          Length = 974

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 303 DKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLLAQYPDI 187
           D  T+L  +A +  +N   +HTVDV +  RDL  +Y  +
Sbjct: 88  DFKTNLTYVADVGFTNTGFIHTVDVGNLQRDLAQRYTTV 126


>05_05_0251 + 23616546-23617760
          Length = 404

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -2

Query: 243 HTVDVSHPYRDLLAQYPDITKPASFKEVSSHNVLHYIETTGPPVH 109
           H + + +PY         ++ P   ++  +  + HY + TGP VH
Sbjct: 118 HRLRIPYPYVSWATVAATLSSPPENEDCLAAAICHYCQETGPRVH 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,181,136
Number of Sequences: 37544
Number of extensions: 158020
Number of successful extensions: 353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)