Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o04
         (397 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13194| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.78 
SB_11938| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.78 
SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)                  27   7.3  
SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_34294| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)         26   9.6  
SB_26219| Best HMM Match : MANEC (HMM E-Value=0.12)                    26   9.6  

>SB_13194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 243 HTVDVSHPYRDLLAQYPDITKPASFKEVSSHNVLH---YIETTGPPV 112
           + VDV+ PY D+   Y D+T P     V  H +L    Y++ T P V
Sbjct: 178 YNVDVTVPYVDVTVPYGDVTVPYVDGTVPCHRMLMLYVYVDVTVPYV 224



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 237 VDVSHPYRDLLAQYPDITKPASFKEVSSHNV-LHYIETTGPPVHARARPLA-PIF 79
           VDV+ PY D    Y D+T P     V   +V + Y++ T P +    +P   P+F
Sbjct: 224 VDVTVPYVDGTVPYVDVTVPYVDVTVPYVDVTVPYVDVTVPYIDVTLKPTGIPLF 278



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 243 HTVDVSHPYRDLLAQYPDITKPASFKEVSSHNV-LHYIETTGPPV 112
           + VDV+ PY D+   Y D+T P     V   +V + Y++ T P V
Sbjct: 79  YNVDVTVPYVDVTVPYGDVTVPYVDGTVPYVDVTVPYVDVTVPYV 123


>SB_11938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 243 HTVDVSHPYRDLLAQYPDITKPASFKEVSSHNVLH---YIETTGPPV 112
           + VDV+ PY D+   Y D+T P     V  H +L    Y++ T P V
Sbjct: 178 YNVDVTVPYVDVTVPYGDVTVPYVDGTVPCHRMLMLYVYVDVTVPYV 224



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 243 HTVDVSHPYRDLLAQYPDITKPASFKEVSSHNV-LHYIETTGPPV 112
           + VDV+ PY D+   Y D+T P     V   +V + Y++ T P V
Sbjct: 79  YNVDVTVPYVDVTVPYGDVTVPYVDGTVPYVDVTVPYVDVTVPYV 123


>SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 189 ITKPASFKEVSSHNVLHYIETTGPPVHARARPL 91
           I  P+  K+V  H +L   E++ PPVH   RP+
Sbjct: 290 INTPSMPKQVYDHGLLTSSESSIPPVHEDFRPV 322


>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 213  DLLAQYPDITKPASFKEVSSHNVLHY 136
            D LA +PD ++ +  KEVS   VL+Y
Sbjct: 2579 DGLAHFPDCSRVSKVKEVSIKGVLYY 2604


>SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 372 AILGADFLTSNNLLVDMGERKL 307
           AILG DFL  +N  +D+  R L
Sbjct: 806 AILGKDFLIQHNAQIDLASRSL 827


>SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)
          Length = 691

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 246 LHTVDVSHPYRDLLAQYPDITKPASFKEVSSHN-VLHYIET 127
           L+ + VS PYRDL   Y  +    S  + S+    LH +ET
Sbjct: 535 LYLLPVSSPYRDLTTTYGSLQMELSATQESAPRFTLHAMET 575


>SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 114 PVDQ*FQYNAKRYENLLP*MTLVS*CRGTALTNHDMDDSHQQYA 245
           P++  F +  K   + +     VS C+ T +T+HDM  S +  A
Sbjct: 152 PIEYVFYWFHKGVSSFIANFIFVSPCQQTIITSHDMASSSEDPA 195


>SB_34294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = -2

Query: 243 HTVDVSHPYRDLLAQYPDITKPASFKEVSSHNVLHYIETTGPPVHARARP----LAPIFR 76
           H  D + PY++L   Y D   P    +      ++ I+T+  P+    +P    L PI  
Sbjct: 142 HYKDHATPYKNLALSYEDNATPYKDHDTPIKTWINLIKTSLHPIKTLLQPIKTLLHPIKN 201

Query: 75  *FTLK 61
            F+LK
Sbjct: 202 LFSLK 206


>SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)
          Length = 609

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = -2

Query: 303 DKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLLAQYPDITKPASFKEVSSHNVLHYIE 130
           + +TDL  L      N P+L T+DVSH   + L    D T P + +   SHN +  IE
Sbjct: 139 NSLTDLTALG-----NMPNLITLDVSH---NKLTTVLDFTPPLALR---SHNNIKKIE 185


>SB_26219| Best HMM Match : MANEC (HMM E-Value=0.12)
          Length = 307

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 240 TVDVSHPYRDLLAQYPDITKPASFKEVSSHNVLHY 136
           ++DV+ P  D    +PD TKP     + S + + Y
Sbjct: 113 SIDVTKPDPDATKPHPDATKPGPDAALCSRSAVDY 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,056,365
Number of Sequences: 59808
Number of extensions: 196018
Number of successful extensions: 468
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)