Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10o04
(397 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC021898-1|AAH21898.1| 104|Homo sapiens AP1S3 protein protein. 29 4.2
AB177850-1|BAD66828.1| 1217|Homo sapiens KIAA0596 splice variant... 29 4.2
BC009606-1|AAH09606.1| 164|Homo sapiens AP1S3 protein protein. 29 5.6
AF393369-1|AAL09586.1| 154|Homo sapiens sigma 1C adaptin protein. 29 5.6
AC093884-1|AAY24166.1| 143|Homo sapiens unknown protein. 29 5.6
X05615-1|CAA29104.1| 2767|Homo sapiens thyroglobulin protein. 28 9.7
U93033-1|AAC51924.1| 2768|Homo sapiens thyroglobulin protein. 28 9.7
AF105687-1|AAC95473.1| 421|Homo sapiens thyroglobulin protein. 28 9.7
AB209159-1|BAD92396.1| 1574|Homo sapiens Thyroglobulin precursor... 28 9.7
>BC021898-1|AAH21898.1| 104|Homo sapiens AP1S3 protein protein.
Length = 104
Score = 29.5 bits (63), Expect = 4.2
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = -2
Query: 384 DVKQAILGADFLTSNNLLVDMGERKLIDKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLL 205
++ Q IL TS+ VD E KL+ K C + + L T+++ H Y +LL
Sbjct: 34 EIVQIILSRGHRTSS--FVDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELL 91
Query: 204 AQYPDITKP 178
+Y T P
Sbjct: 92 DKYFGNTWP 100
>AB177850-1|BAD66828.1| 1217|Homo sapiens KIAA0596 splice variant 1
protein.
Length = 1217
Score = 29.5 bits (63), Expect = 4.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 351 LTSNNLLVDMGERKLIDKVTDLNVLACIVVSNQPSL 244
+TS+ LL + +R+L+DK +L V + SNQ L
Sbjct: 79 ITSSGLLCEFSDRRLLDKWVELRVYPEVKDSNQACL 114
>BC009606-1|AAH09606.1| 164|Homo sapiens AP1S3 protein protein.
Length = 164
Score = 29.1 bits (62), Expect = 5.6
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 384 DVKQAILGADFLTSNNLLVDMGERKLIDKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLL 205
++ Q IL TS+ VD E KL+ K C + + L T+++ H Y +LL
Sbjct: 34 EIVQIILSRGHRTSS--FVDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELL 91
Query: 204 AQY 196
+Y
Sbjct: 92 DKY 94
>AF393369-1|AAL09586.1| 154|Homo sapiens sigma 1C adaptin protein.
Length = 154
Score = 29.1 bits (62), Expect = 5.6
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 384 DVKQAILGADFLTSNNLLVDMGERKLIDKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLL 205
++ Q IL TS+ VD E KL+ K C + + L T+++ H Y +LL
Sbjct: 34 EIVQIILSRGHRTSS--FVDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELL 91
Query: 204 AQY 196
+Y
Sbjct: 92 DKY 94
>AC093884-1|AAY24166.1| 143|Homo sapiens unknown protein.
Length = 143
Score = 29.1 bits (62), Expect = 5.6
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 384 DVKQAILGADFLTSNNLLVDMGERKLIDKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLL 205
++ Q IL TS+ VD E KL+ K C + + L T+++ H Y +LL
Sbjct: 34 EIVQIILSRGHRTSS--FVDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELL 91
Query: 204 AQY 196
+Y
Sbjct: 92 DKY 94
>X05615-1|CAA29104.1| 2767|Homo sapiens thyroglobulin protein.
Length = 2767
Score = 28.3 bits (60), Expect = 9.7
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -2
Query: 342 NNLLVDMG---ERKLIDKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLLAQYPDITKPAS 172
NN V +G +L VT + L I V++ P LH ++ + +DLL ++ D+ + S
Sbjct: 1347 NNSSVQVGCLTRERLGVNVTWKSRLEDIPVASLPDLHDIERALVGKDLLGRFTDLIQSGS 1406
Query: 171 FK 166
F+
Sbjct: 1407 FQ 1408
>U93033-1|AAC51924.1| 2768|Homo sapiens thyroglobulin protein.
Length = 2768
Score = 28.3 bits (60), Expect = 9.7
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -2
Query: 342 NNLLVDMG---ERKLIDKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLLAQYPDITKPAS 172
NN V +G +L VT + L I V++ P LH ++ + +DLL ++ D+ + S
Sbjct: 1348 NNSSVQVGCLTRERLGVNVTWKSRLEDIPVASLPDLHDIERALVGKDLLGRFTDLIQSGS 1407
Query: 171 FK 166
F+
Sbjct: 1408 FQ 1409
>AF105687-1|AAC95473.1| 421|Homo sapiens thyroglobulin protein.
Length = 421
Score = 28.3 bits (60), Expect = 9.7
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -2
Query: 342 NNLLVDMG---ERKLIDKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLLAQYPDITKPAS 172
NN V +G +L VT + L I V++ P LH ++ + +DLL ++ D+ + S
Sbjct: 203 NNSSVQVGCLTRERLGVNVTWKSRLEDIPVASLPDLHDIERALVGKDLLGRFTDLIQSGS 262
Query: 171 FK 166
F+
Sbjct: 263 FQ 264
>AB209159-1|BAD92396.1| 1574|Homo sapiens Thyroglobulin precursor
variant protein.
Length = 1574
Score = 28.3 bits (60), Expect = 9.7
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -2
Query: 342 NNLLVDMG---ERKLIDKVTDLNVLACIVVSNQPSLHTVDVSHPYRDLLAQYPDITKPAS 172
NN V +G +L VT + L I V++ P LH ++ + +DLL ++ D+ + S
Sbjct: 154 NNSSVQVGCLTRERLGVNVTWKSRLEDIPVASLPDLHDIERALVGKDLLGRFTDLIQSGS 213
Query: 171 FK 166
F+
Sbjct: 214 FQ 215
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,170,294
Number of Sequences: 237096
Number of extensions: 915132
Number of successful extensions: 1599
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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