Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o04
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016686-5|ABO16458.1|  407|Caenorhabditis elegans Hypothetical ...    30   0.69 
U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z71264-6|CAC35821.1|  374|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AL008986-1|CAC35820.1|  374|Caenorhabditis elegans Hypothetical ...    27   4.9  

>AF016686-5|ABO16458.1|  407|Caenorhabditis elegans Hypothetical
           protein R07C3.7 protein.
          Length = 407

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 128 LLVHRCMLVLDHWHPFFVD-LHLKHNLLSFNTENNTTTLH 12
           LL HRC L+ +   P F++ L ++HN +  N      T+H
Sbjct: 23  LLSHRCPLIPEKLVPIFIENLQIEHNSIIINKTMYDFTIH 62


>U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical
           protein T25B6.2 protein.
          Length = 798

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -2

Query: 267 VVSNQPSLHTVDVSHPYRDLLAQYPDITKPASFKEVSSHNVLHYIETTG 121
           V   + S  TV  ++    LLA   D   PA+ K  S  N +HY    G
Sbjct: 358 VFDGKTSNSTVVANYMIAQLLADESDFINPATAKVSSDTNYIHYALRNG 406


>Z71264-6|CAC35821.1|  374|Caenorhabditis elegans Hypothetical
           protein K07G5.6 protein.
          Length = 374

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 255 QPSLHTVDVSH-PYR-DLLAQYPDITKPASFKEVSSHNVLHYI 133
           + SL TV   H P++   L Q+ +++     KE+ SH   HYI
Sbjct: 105 EESLDTVVPEHGPFKVSRLFQFDEVSFEDQLKEIKSHRSQHYI 147


>U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical
           protein F23F12.8 protein.
          Length = 980

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -2

Query: 261 SNQPSLHTVDVSHPYRDLLAQYPDITKPASFKEVSSHNVLHYIETTGPPVHARARPLAP 85
           ++QP +++     P +DLL + P++            N +H    +G   H   RP+AP
Sbjct: 800 THQPQIYSTIDQFP-KDLLPKIPELATAEKTYAQQYQNHIHGSVVSGGHNHQVVRPIAP 857


>AL008986-1|CAC35820.1|  374|Caenorhabditis elegans Hypothetical
           protein K07G5.6 protein.
          Length = 374

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 255 QPSLHTVDVSH-PYR-DLLAQYPDITKPASFKEVSSHNVLHYI 133
           + SL TV   H P++   L Q+ +++     KE+ SH   HYI
Sbjct: 105 EESLDTVVPEHGPFKVSRLFQFDEVSFEDQLKEIKSHRSQHYI 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,268,738
Number of Sequences: 27780
Number of extensions: 150553
Number of successful extensions: 341
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)