Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o04
         (397 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ...    29   1.1  
At2g46960.2 68415.m05866 cytochrome P450 family protein similar ...    26   7.9  

>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
           (Swiss-Prot:Q9H583) [Homo sapiens]
          Length = 1830

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = -2

Query: 393 FFADVKQAILGADFLTSNNLLVDMGERKLIDKVTDLNVLACIVV 262
           FFA    ++L +   T+N+LLV +G +K  D+ T  N+L+ I++
Sbjct: 794 FFASYLTSLLSS---TTNDLLVPVGLQKRFDQSTKENILSVILL 834


>At2g46960.2 68415.m05866 cytochrome P450 family protein similar to
           cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
           contains Pfam profile: PF00067: Cytochrome P450;
           supported by cDNA: gi_13605860_gb_AF367329.1_AF367329
          Length = 519

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 155 LITFCIILKLLVHRCMLVLDHWHPFFVDLHLKHNLLS 45
           LI   +I+ L + +  ++L  WHPF +   LK+  +S
Sbjct: 9   LIVLILIIGLRIFKAFMILV-WHPFVLTRRLKNQGIS 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,580,276
Number of Sequences: 28952
Number of extensions: 133932
Number of successful extensions: 276
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)